Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01765 ATGAAAGAACTAGAACTGGTATATCAGTGCACATACACATCTTTTGTTAGCTATGTTTATGGTGAGGAACTGGGAGTGTGTATAACCTGGAACAATGATTGGAATGCAGTTATCATGGTTCTTTTTCCATCTTTTGTGAATGGATTGGCAAGAACCGTGTCAATCAAGAAGGAGAAGAATTGTAAAAGGGAAGATGGAAGGACAGCTGCAGAAGAATTGGCAAAGGAAGCAAGGAAGAGTGAATTGTTACTGAGTTCATCTGGAGTTGTTAGGTCGACAAAGGCCAACAATTTTGCTTCTGTGTTCACTAATAGGGGACGGAAAGGAGTGAATCAGGATCGTCTTCTTGTTTGGGAGGAATTTGGATGCCAACAAGACATTATGTTCTGTGGAGTTTTTGATGGGCATGGCCCTTGGGGACACTTTGTAGCAAAAAGGGTCAAGAAACTAGTGCCAACAATTTTGCTGTGCAATTGGCAAGAAAATCTGGCTGCAACATCACTTGACCTGGATTTTAAGATGGAAGCAGACAGACATATCCATGGTTTGAACGTGTGGAAGCAGTCCTACATCAAGACTTATGCTGCTGTTGATCAGGATCTGAAGCAGCAAACCGGGTTCGATTCATTTCTTAGTGGCACAACAGCATTGACAATTATCAAACAGGGTGAATATCTTATTACAGCAAACATAGGAGATTCTAGGGCTGTCTTGGCAACCGCTTCAGAGGATGGCACATTAACTCCACATCAGCTTACCACTGACTTCAAGCCAAATTTACCACAGGAAGCTGAACGCATAACACAATGTAGAGGGCAGGTATTTAGTTTGGAAGATGAACCAGGAGTGTACAGGGTGTGGATGCCAAATGGTAAACCACCAGGACTAGCAATATCTAGAGCTTTAGGAGATCACTGCATGAAGGAATTTGGACTAATTTCTGTGCCTGATGTCACACAAACAAAAATTACAACCAGGGATCAATTTGTCATATTGGCAACAGATGGGGTATGGGATGTTATATCCAATCAGGAAGCAGTGGAGATTGTTTCTGCAACACCACATAAAGAAAAAGCAGCTCAAAAGCTCGTTAAATGCGCCATACGTGAATGGAAGCGGAAGAAAAGTGGCATTGCTATGGATGACATGTCAGCTATTTGCCTCTTCTTTCACTCCTTCCCTTCTCAAAAACTCCCAGCCATTAAAACTGTTGATTAA 1218 0.4212 MKELELVYQCTYTSFVSYVYGEELGVCITWNNDWNAVIMVLFPSFVNGLARTVSIKKEKNCKREDGRTAAEELAKEARKSELLLSSSGVVRSTKANNFASVFTNRGRKGVNQDRLLVWEEFGCQQDIMFCGVFDGHGPWGHFVAKRVKKLVPTILLCNWQENLAATSLDLDFKMEADRHIHGLNVWKQSYIKTYAAVDQDLKQQTGFDSFLSGTTALTIIKQGEYLITANIGDSRAVLATASEDGTLTPHQLTTDFKPNLPQEAERITQCRGQVFSLEDEPGVYRVWMPNGKPPGLAISRALGDHCMKEFGLISVPDVTQTKITTRDQFVILATDGVWDVISNQEAVEIVSATPHKEKAAQKLVKCAIREWKRKKSGIAMDDMSAICLFFHSFPSQKLPAIKTVD 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01765 405 SMART PP2C_4 89 388 IPR001932 -
Vimu7g01765 405 Gene3D - 85 392 IPR036457 -
Vimu7g01765 405 SUPERFAMILY PP2C-like 91 392 IPR036457 -
Vimu7g01765 405 Pfam Protein phosphatase 2C 120 370 IPR001932 -
Vimu7g01765 405 PANTHER PROTEIN PHOSPHATASE 79 388 IPR015655 GO:0004722|GO:0006470
Vimu7g01765 405 FunFam Probable protein phosphatase 2C 34 89 392 - -
Vimu7g01765 405 CDD PP2Cc 97 390 IPR001932 -
Vimu7g01765 405 ProSiteProfiles PPM-type phosphatase domain profile. 98 390 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01765 Vimu-Chr7 16243464 16245343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01765 39 391 PP2C-type Phosphatase Gene Family AT3G05640 57.746 5.32e-157 445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01765 - - gmx:100817397 660.218