Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01761 ATGGGGAGAATGGGACAAGACTCAGACCCCAAGTCCAAGTTGGTATTAGAGATTTGCTCCATTTCCACGCGTTCTGTTGTATGTGTTCATCATAAACTTCTCTCAGAATCAGCTGACACAACTTTCGTTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTGAGTGCCATCCGTAAGAGGTACCATAAACTCGCCTTACAAGTTCACCCGGATAAGAATAAGCACCCCAAGGCTGAAATTGCTTTCAAGCTCGTTTCTGAGGCGTATGCATGTCTATCTAATGCAGCAAAGAGGAAAGCCTTTGACTTGGAGAGATATAAGCATTTCTGCATCCAGTGCAAAAGAATTCCGTATACATCCAGTAATGTCCCAGTCAATTCAGGGGGACCAGGTTTTAGGGCATGGAATATCATTACAAGATCAAGATCTTTTAAACTTTGGAGAAATATTAGGGAAATGAGAGAAAGATTCATGGACGAGGCTAATGTGATAGAGAACTGTTTGCGAACAAATTCAATGTCAAGGAAAGAATCTCCAGCCCAGAATCCGGTTGGGTTTCTACATAGAAGCAAGTCGCTTAATAGATTTGAGAAAGAAACCCCTGTTTTCAATCCGTCGGATTATCTGTACCAAGGCTACCCTCACCTGAGGAGCAATATTTACAAGAATTCTTCAACTTTTTGGTACGTGCAGAGAAATAGTATGCTTCACAATGAAAAGGGAGGAGCGCTGCATGCCTCCCCTGTTTTTGAGGTCCAATCTAGGAGTTTGTTTGCAAGCAAATTCGCTTTTGTCCCATCAAAATGCTAG 819 0.4249 MGRMGQDSDPKSKLVLEICSISTRSVVCVHHKLLSESADTTFVDWYCILGVEENAGVSAIRKRYHKLALQVHPDKNKHPKAEIAFKLVSEAYACLSNAAKRKAFDLERYKHFCIQCKRIPYTSSNVPVNSGGPGFRAWNIITRSRSFKLWRNIREMRERFMDEANVIENCLRTNSMSRKESPAQNPVGFLHRSKSLNRFEKETPVFNPSDYLYQGYPHLRSNIYKNSSTFWYVQRNSMLHNEKGGALHASPVFEVQSRSLFASKFAFVPSKC 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01761 272 ProSitePatterns Nt-dnaJ domain signature. 85 104 IPR018253 -
Vimu7g01761 272 Pfam DnaJ domain 44 105 IPR001623 -
Vimu7g01761 272 SUPERFAMILY Chaperone J-domain 40 108 IPR036869 -
Vimu7g01761 272 Gene3D DnaJ domain 31 119 IPR036869 -
Vimu7g01761 272 ProSiteProfiles dnaJ domain profile. 44 108 IPR001623 -
Vimu7g01761 272 PANTHER BNAC03G44070D PROTEIN 24 232 - -
Vimu7g01761 272 CDD DnaJ 44 97 IPR001623 -
Vimu7g01761 272 PRINTS DnaJ domain signature 64 79 IPR001623 -
Vimu7g01761 272 PRINTS DnaJ domain signature 80 100 IPR001623 -
Vimu7g01761 272 PRINTS DnaJ domain signature 46 64 IPR001623 -
Vimu7g01761 272 FunFam Chaperone protein dnaJ 49 isoform A 43 166 - -
Vimu7g01761 272 SMART dnaj_3 43 100 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01761 Vimu-Chr7 16223289 16224492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01761 4 105 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 33.945 3.86e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01761 - - gmx:100801809 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01761 7 16223289 16224492 Vimu7g01761 7 16223289 16224492 ECH
Vimu7g01761 7 16223289 16224492 Vimu10g00156 10 893108 894132 PCT