Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01747 ATGTTGTTGTTGTTGCTGTTATTATTATTATTGTTGTGGTGGTGCTACTGTTCTGTTAGGTTCTGTTTGGATCTCCGAAGCATGAATCTGGGCAACGGAAAGGGATCCATGTCAGCGGTTACTACAACAGGGGTTATGAAATCCGGAGACGCTGTCTCCGACCAGTTTCCGGCGGGTCTCAGGGTTCTGGTGGTCGATGATGATCCCACGTGCCTCATGATTCTCGAGAAGATGCTTCGCACATGCCTCTACGAAGTTACCAAATGCAACAGAGCAGAGACTGCGCTTTCACTTCTTAGAGAGAACAAAAATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCTGACATGGACGGATTTAAACTTCTGGAGCACATTGGGTTGGAGATGGACCTTCCTGTTATCATGATGTCTGCGGATGATGGTAAAAGTGTTGTTATGAAGGGTGTGACTCACGGTGCTTGTGATTATCTGATTAAGCCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCATGTGGTTCGGAAGAAGAAGAATGAGTGGAAAGACGCAGAGCAATCCGGCAGTGCCGAAGAAGGAGATCGCCAACCTAAGGCGTCTGATGAAGCAGATTACTCTTCCTCGGCTAACGAAGGCAGTTGGAGAAACTCAAAGAAGAGAAGGGACGAGGAGGAGGAGGCAGAGGATAGAGATGACACATCCACGTTAAAGAAACCGCGAGTTGTTTGGTCTGTGGAGCTTCATCAACAGTTTGTGGCTGCTGTGGATCAGCTCGGAATTGACAACCTATGTAACGGAACTTTTGATGCATGGGTTGTTGGGATTTTTGTTTGTATATTGTCCAAAACAACACTTTTACCACTTTGGTCTCCAGTTTTTCGATACTCCCATTGCCTGGGTCGTTGCAAGGAGGTTTTGCATGCTTTTCAAATTATTCGGGTCAGCAATGTTAATAGATACATTATGACTCTCCATTTTGGCTTTATAATTGCATCTATAGTCAATTCTCATCCCACAGAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCATCTGCAGAAATACCGGTTGTATCTTCGAAGATTGAGTGGAGTTTCTCAGCACCAGAATAATATGAACAACTCCTTTCTCGGCTCTCAAGAGGCAACATTTGGGACAATTTCTTCAATTAGCGGGATTGATCTTCAAACTCTTGCAGTTGCTGGCCAGCTTCCTGCTCAAAGTCTGGCTACTCTTCAAGCAGCAGGACTTGGTAGGTCAACTGCCAAAGCTGGTGTACCAATGCCTATCATGGATCAAAGAAACCTTTTTAGTTTTGAAAACCCAAGGGTAAGATTTGGAGAAGGCCAACAGCAACATTTAAGCAGTAGTAAACCAATGAACTTATTGCTTGGAATCCCTACCAACATGGAGCCTAAGCAGCTTGCCAATTTGCACCAGTCTACCCAATCCATTGCCAGCTTGAATATGCGAGTCAATGCTTCTGCCCCACAAGGCAACCCCTTATTGATGCAGATGCCACAATCCCAACCTAGAGGTCAGATGCTAAGTGAAAATACTGGTCCTCGTGTTCCCAGGCTTCCATCATCTTTGGGGCAGCCTAATGTATCAAATGGAATTTCTAATGGCTTTCTGGGAAGAAATGGCATTGCTGGTAATAACAGAGGACCTGCGTATAATCCTGTTCCACCAAACTCTTCGTTGTTGAGTTTTCCAATGAATCAAAGCTCTGAAGTGTCCGTCAACAATAGTTTACCTCTTGGAAGCACTCCAGGTATATCCAGTATCACAACAAAAGGCTCATTTCAGGAGGAAGTTACATCTGGAATTAAGGCATCTGGTGCATTCCCAAGTTATGATATTTTTAATGAACTGCACCATCACAAGTCCCATGATTGGGAGATAACAAACCCAGGCCTGTCATACAGTGCCCCCCATCATGCAAATCCTTTACAAGGTAACATTGATGTCTCCCCATCAGTTTTGGTGCATCAAGGGTTTTCTTCTACCCAGCATACCGGCCAAAGCAGAGATGCTACTTTAATGGGAAAAGCTATGTTCTCCGTGGGAGAAGGCTCGGAACAAGATAACCTCCAAAATGCTGTTCAACACCTCCATCCGCTTCTTGTTGACAATTCAGTAAGGGTTAAGTCTGAAAGAATTCCCGATGCAAGCTCCCAGACTAATCTCTTCCCTGACCATTATGGGCAGGAGGATCTGATGAGTGCGCTTCTAAAGCAGCAAGAAGGCATGGGACCAGGTGAGAGTGAGTTCGAATTTGATGCTTATTCTCTGGACAACATCCCTGTCTAG 2355 0.4484 MLLLLLLLLLLLWWCYCSVRFCLDLRSMNLGNGKGSMSAVTTTGVMKSGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKKNEWKDAEQSGSAEEGDRQPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDNLCNGTFDAWVVGIFVCILSKTTLLPLWSPVFRYSHCLGRCKEVLHAFQIIRVSNVNRYIMTLHFGFIIASIVNSHPTEAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNMNNSFLGSQEATFGTISSISGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPMPIMDQRNLFSFENPRVRFGEGQQQHLSSSKPMNLLLGIPTNMEPKQLANLHQSTQSIASLNMRVNASAPQGNPLLMQMPQSQPRGQMLSENTGPRVPRLPSSLGQPNVSNGISNGFLGRNGIAGNNRGPAYNPVPPNSSLLSFPMNQSSEVSVNNSLPLGSTPGISSITTKGSFQEEVTSGIKASGAFPSYDIFNELHHHKSHDWEITNPGLSYSAPHHANPLQGNIDVSPSVLVHQGFSSTQHTGQSRDATLMGKAMFSVGEGSEQDNLQNAVQHLHPLLVDNSVRVKSERIPDASSQTNLFPDHYGQEDLMSALLKQQEGMGPGESEFEFDAYSLDNIPV 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01747 784 MobiDBLite consensus disorder prediction 526 551 - -
Vimu7g01747 784 MobiDBLite consensus disorder prediction 182 235 - -
Vimu7g01747 784 MobiDBLite consensus disorder prediction 182 203 - -
Vimu7g01747 784 PANTHER TWO-COMPONENT RESPONSE REGULATOR 60 381 IPR045279 GO:0009736
Vimu7g01747 784 SMART REC_2 60 172 IPR001789 GO:0000160
Vimu7g01747 784 Gene3D - 237 377 - -
Vimu7g01747 784 NCBIfam myb-like DNA-binding domain, SHAQKYF class 340 371 IPR006447 GO:0003677
Vimu7g01747 784 PIRSF RR_ARR_type-B 36 266 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vimu7g01747 784 PIRSF RR_ARR_type-B 341 776 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vimu7g01747 784 ProSiteProfiles Response regulatory domain profile. 61 176 IPR001789 GO:0000160
Vimu7g01747 784 FunFam Two-component response regulator 60 197 - -
Vimu7g01747 784 MobiDBLite consensus disorder prediction 216 235 - -
Vimu7g01747 784 SUPERFAMILY Homeodomain-like 334 375 IPR009057 -
Vimu7g01747 784 CDD REC_typeB_ARR-like 62 176 - -
Vimu7g01747 784 Pfam Response regulator receiver domain 62 170 IPR001789 GO:0000160
Vimu7g01747 784 SUPERFAMILY CheY-like 59 182 IPR011006 -
Vimu7g01747 784 Gene3D - 60 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01747 Vimu-Chr7 16114931 16118526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01747 28 264 Response Regulator Gene Family AT4G16110 70.612 2.21e-109 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vimu7g01747 Response_reg 7.5e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01747 - K14491 gmx:100814930 790.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01747 7 16114931 16118526 Vimu7g01747 7 16114931 16118526 ECH
Vimu7g01747 7 16114931 16118526 Vimu10g00139 10 809609 812908 PCT