Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01743 ATGGGTGTGAAGACAAGGGAAAAGATTCTTCCAGTAGGAGAAAAAGAAGAGGAGGGAAGGGGCATTCTAGACATTTTCTATGGGATCGCACACTTACTCTCCAACACTCACTCTGCTTCCTCTGCTCACTCTGCATGCTTCTTCCTTCGCTCTGATTCCGCCGAAACAGAGTGGTGGTCTCGGAAATCAATCGAATCTCAGATCTCGGTGATCAGAATGGTGGATCCAACTGGAAAAGGATCGGAGGGTGAGGACTCAAACCCTAACGCGCCTTCCTCGGGGAACAGTCCCAGCAGCAACAATGAGCAGAAGAAAACCTGCGCCGATTGCGGTACCACCAAGACTCCACTCTGGAGGGGAGGTCCGGCGGGACCTAAGTCTCTGTGCAACGCCTGCGGGATCAGAAGCAGGAAGAAGAAGAGAGCGATTCTGGGGATAAGCAAGGGGAACAACGAGGATGGAAGAAAGGGGAAGAAGAGTGGCGGCGCCGGGGCTGCCGCTATAGGTGGCGGCGCGTTGGGGAGGGAGGTATTGTTGCACCGATCACATTGGAAGAAGCTCGGGGAGGAAGAAAAAGCTGCGGTGCTTTTGATTTTTATTATTATTATTATTATTATTATTATTATAAACCTGATAATTACCTCATTATAG 651 0.5008 MGVKTREKILPVGEKEEEGRGILDIFYGIAHLLSNTHSASSAHSACFFLRSDSAETEWWSRKSIESQISVIRMVDPTGKGSEGEDSNPNAPSSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGISKGNNEDGRKGKKSGGAGAAAIGGGALGREVLLHRSHWKKLGEEEKAAVLLIFIIIIIIIIIINLIITSL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01743 216 ProSitePatterns GATA-type zinc finger domain. 107 132 IPR000679 GO:0006355|GO:0043565
Vimu7g01743 216 Pfam GATA zinc finger 107 141 IPR000679 GO:0006355|GO:0043565
Vimu7g01743 216 MobiDBLite consensus disorder prediction 70 108 - -
Vimu7g01743 216 MobiDBLite consensus disorder prediction 82 108 - -
Vimu7g01743 216 Gene3D - 98 183 IPR013088 GO:0006355|GO:0008270
Vimu7g01743 216 ProSiteProfiles GATA-type zinc finger domain profile. 101 137 IPR000679 GO:0006355|GO:0043565
Vimu7g01743 216 CDD ZnF_GATA 106 141 IPR000679 GO:0006355|GO:0043565
Vimu7g01743 216 PANTHER OS01G0976800 PROTEIN 84 198 - -
Vimu7g01743 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 141 - -
Vimu7g01743 216 SMART GATA_3 101 154 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01743 Vimu-Chr7 16084600 16086996 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01743 98 200 C2C2-Gata Transcription Factor Family AT5G49300 53.153 2.33e-29 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu7g01743 GATA 1.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01743 - - pvu:PHAVU_003G110400g 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01743 7 16084600 16086996 Vimu7g01743 7 16084600 16086996 ECH