Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01742 ATGTCTCTCAGGCCAAATGCCAGAACCGAGGTTCGCCGCAACCGTTACAAGGTTGCAGTTGATGCTGACGAGGGTCGCCGGCGAAGAGAGGATAATATGGTCGAGATCCGAAAGAGCAAGCGCGAAGAGAGCTTACAGAAGAAGCGTCGTGAAGGTCTCCAAGCTCAGCAACAGTTTGCGGCTCCTCTTCAGGCTTCCACTGTCGACAAGAAGTTAGAGAGTCTTCCTGCTATGGTTGCTGGAGTTTGGTCGGATGATAATACTCTTCAACTTGAAGCCACCACGCAATTTCGCAAGCTTCTTTCCATTGAGCGGAGCCCTCCAATTGAGGAAGTTATTCAAGCTGGTGTTGTTCCTCGTTTTGTCGAGTTTCTTGTCAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCCTGGGCGCTTACAAACATTGCATCTGGGACTTCTGAGAACACTAAGGTGGTCATTGATCATGGGGCAGTTCCTATATTTGTCACGCTGCTTAGTTCGCCTAGCGATGATGTTCGGGAACAGGCAGTGTGGGCTTTGGGAAATGTTGCTGGTGACTCCCCTAGGTGTCGAGATCTAGTGCTCAGCCATGGTGCCCTCGTCCCACTATTGGCTCAGTTGAATGAACATGCAAAACTCTCAATGCTAAGAAATGCCACATGGACATTATCTAACTTTTGTAGGGGTAAGCCACAGCCTCCATTTGAGCAGGTGAGACCAGCGCTGCCAGCACTTGAGCGCTTGATCTTCTCCAATGATGAAGAAGTCTTGACAGATGCTTGCTGGGCATTATCATATCTTTCTGATGGTACAAATGACAAGATTCAAGCAGTTATTGAAGCCGGTGTATGTCCCAGATTGGTGCAGCTGCTCTTGAACCAATCTCCATCAGTGCTGATTCCTGCTCTCCGTACTGTCGGAAATATTGTGACTGGAGATGACATGCAAACTCAGGCTGTTATTGAAGCTGGTCTGGTTGCCCCCCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAGGAAGCTGCCTGGGCAATCTCAAATGCTACATCTGGTGGAACTCATGACCAGATTAAGTACTTGGTTGGTCAGGGTTGTATAAAGCCTCTTTGTGATCTTCTTGTTTGTCCGGACCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATTCTGAAGGTTGGAGAAGCCGAGAAGAGCCTTGGCAACACTGGAGATGTCAACTTGTATGCACAGATGATAGATGATGCTGAGGGATTAGAGAAGATTGAAAACCTGCAGAGTCATGACAACAATGAAATCTACGAAAAGGCTGTTAAACTTCTTGAAACATACTGGTTGGAAGATGAGGACGAGACCCTACCCCCAGGAGATGGTGCTCAACCTGGTTTTGGTTTTGGAAATGAGCTCCCAGTCCCGGGCTTGTGGGATGAAGTAGTATTAATGCCTGGTGGCTTTTGGGATAAAGTCTTGGAGGGTCAGTTATTGCACCTTGTGTCTGCTTACGGTCTGGTCTGGTCTGGTCTGGTCTGGTGTCCCTTGTGGTTTATGAGGTGCCGGGGAGGGTCAGTTAGCTACCATGTCCAAGTAAAGAAGGGACTGGTGGATTCAACAGCAGCATAA 1641 0.4784 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFAAPLQASTVDKKLESLPAMVAGVWSDDNTLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVTLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLIFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLLNQSPSVLIPALRTVGNIVTGDDMQTQAVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGTHDQIKYLVGQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKLLETYWLEDEDETLPPGDGAQPGFGFGNELPVPGLWDEVVLMPGGFWDKVLEGQLLHLVSAYGLVWSGLVWCPLWFMRCRGGSVSYHVQVKKGLVDSTAA 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01742 546 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 355 IPR000225 GO:0005515
Vimu7g01742 546 MobiDBLite consensus disorder prediction 23 53 - -
Vimu7g01742 546 FunFam Importin subunit alpha 70 337 - -
Vimu7g01742 546 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Vimu7g01742 546 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Vimu7g01742 546 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Vimu7g01742 546 Pfam Armadillo/beta-catenin-like repeat 360 397 IPR000225 GO:0005515
Vimu7g01742 546 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Vimu7g01742 546 Pfam Armadillo/beta-catenin-like repeat 317 355 IPR000225 GO:0005515
Vimu7g01742 546 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Vimu7g01742 546 Gene3D - 11 50 IPR036975 GO:0006606
Vimu7g01742 546 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Vimu7g01742 546 PANTHER IMPORTIN ALPHA 12 326 - -
Vimu7g01742 546 MobiDBLite consensus disorder prediction 23 50 - -
Vimu7g01742 546 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Vimu7g01742 546 PIRSF Importin_alpha 321 480 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vimu7g01742 546 PIRSF Importin_alpha 2 330 IPR024931 GO:0005737|GO:0006606|GO:0061608
Vimu7g01742 546 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Vimu7g01742 546 FunFam Importin subunit alpha 11 50 - -
Vimu7g01742 546 Gene3D - 73 453 IPR011989 -
Vimu7g01742 546 SUPERFAMILY ARM repeat 6 458 IPR016024 -
Vimu7g01742 546 SMART arm_5 189 231 IPR000225 GO:0005515
Vimu7g01742 546 SMART arm_5 359 399 IPR000225 GO:0005515
Vimu7g01742 546 SMART arm_5 274 314 IPR000225 GO:0005515
Vimu7g01742 546 SMART arm_5 233 272 IPR000225 GO:0005515
Vimu7g01742 546 SMART arm_5 148 188 IPR000225 GO:0005515
Vimu7g01742 546 SMART arm_5 316 356 IPR000225 GO:0005515
Vimu7g01742 546 SMART arm_5 105 146 IPR000225 GO:0005515
Vimu7g01742 546 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 285 327 IPR000225 GO:0005515
Vimu7g01742 546 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Vimu7g01742 546 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Vimu7g01742 546 Pfam Atypical Arm repeat 414 460 IPR032413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01742 Vimu-Chr7 16077740 16082528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01742 131 405 U-box Gene Family AT3G46510 25.000 2.25e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01742 K15042 - gmx:100792804 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01742 7 16077740 16082528 Vimu10g00136 10 792385 796787 PCT