Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01740 ATGAAGCTGTTTGGTTTCTCCTTCAACTTGAAGGCTGCCATAGCCCGTGAAGATGGTCCAAAGAGGTTCCACTGCCGATACTGTCGCCGTCAATTCACAAATTCTCAAGCACTTGGAGGACATCAAAATGCGCACAGGAGGGAACGTGCTAAGCTAGCCCAGTTCAAATACCTTCTCAATCTTCGACAACAACATGACCATAGGTTCAAAGCACCATACAACAACAACAACGGACCAAAAGGGTCTTTGGTTCCTCATCCAAATGCCTCACCCAACGTTAGTGTTGGTAGTGCAACTAGTGCAGCTTTGTTTCAATTTCATGGTGCAGGAACGCTGCTCCTGCAAGTTCCAGCGCCTGACCATGACGTGGATGTGGATCTCAACCTCAGACTCTAG 396 0.4798 MKLFGFSFNLKAAIAREDGPKRFHCRYCRRQFTNSQALGGHQNAHRRERAKLAQFKYLLNLRQQHDHRFKAPYNNNNGPKGSLVPHPNASPNVSVGSATSAALFQFHGAGTLLLQVPAPDHDVDVDLNLRL 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01740 131 Gene3D Classic Zinc Finger 8 79 - -
Vimu7g01740 131 SUPERFAMILY beta-beta-alpha zinc fingers 19 50 IPR036236 -
Vimu7g01740 131 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Vimu7g01740 131 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 18 76 IPR044246 GO:0009788
Vimu7g01740 131 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01740 Vimu-Chr7 16063259 16064012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01740 1 55 C2H2 Transcription Factor Family AT5G06650 42.029 3.48e-11 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01740 - - vra:106766530 250.366