Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01734 ATGGCGAATAACTTGGCGGCACAACTTGTTGGTTCAGAGATACATGGATTCCACACATTGCAAGCATTTAATTGGAGCAAGTTGTTCCCCAGGTTTGATAAATCATCTGGTAAGCGTAAGCCTACTATTGCGTTGCATGGATATTTGGACGTGAGGAGCATTTTGGAGGAAGCGGGAACCAGATGGCTTCGTCCCAATGAAATTCATGCCATGCTTTGTAATAACAAGTATTTTCCCATTAATGTCAAGCCAGTGAATTTGCCAAAAAGCGGTACTATTGTCTTATTTGATCGCAAGATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAAAAGAAAAAGGACGGGAAAACTGTTAAAGAAGCTCACGAGCACTTAAAAGTTGGTAATGAAGAAAGGATACATGTATATTATGCACATGGTCAGGATAACTCAAATTTTGTGCGAAGATGTTATTGGCTGCTTGATAAGAGTATGGAACACATAGTCCTTGTTCATTATCGTGAAACACAAGAGATGCAAGGTTCTCCCGTCACTCCTGTTAATTCACACTCCAGTTCTGTCTCTGATCCTCCTGCACCATGGGTTGTATTGGATGAAATAGATTCAGGGACCACAACCACATATGCTGCTGACATGAGTGACAATGTAAAAGACAAAAGTCATGAACTGAGACTTCATGAGATTAATACACTTGAGTGGGATGACCTAGTGGATGCAAATGATCATAATGCCTCTAGCATGCCTAATGGAGGCAGTGTTGCATATTTTAATCAACAAGATCAAATTTTACTGAATGGCAGTTTCAGCAATGTAGTCAACAATCTATCTGCAGAAATTTCTTCTTTTAATTGTCATCCTCTGCCAATTGCTGGGAGCGACAGTGTTACTTACAATTTTTCAGAAAGTGCCACACTTCAGATGATGGGCAATCAAGCAAATCCAAATGAGCAGAGGAATAATATTGTTTCTTTAAGTGCTGGTTCCTTTGACCCTTTGGTCAGTGAAAGATTGCAAAGCCAGGACAGTTTTGGAATGTGGGTGAACCACATCATGTCTGATTCACCATGTTCAGTTGATGACCCAGCTCTCGAGTCACCAGTTTCATCTGTTCATGAACCATATTTGTCCCCGGTAGTGGATGGTCAGCAAATTTCTCAGCCAGAACAAGTATTTACTATCACGGATGTATCCCCTACGTGGGTATCTTCCTCGGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCATAAGGATTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGCGTTCCTGCAGAAATTGTTCAGGTTGGATTCTATCGGTGCTGGGTACCACCACATTCTCCAGGAATCGTGAATCTCTACTTGAGTCTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGTACTCTTGTCTTGCATGATCCTACAGCTGCAATGGAAGAGAATAACAATTGGGATGAGTTTCGACTACAAATGAGGCTTGCGTATTTGCTATTTGCTAAACAACTAAGCCTAGATGTTATCTCCTGTAAAGTACCACCTAATAGACTTAAGGAAGCTAGGCAATTTGCCCTCAGAACATCATTTATTTCCAATAGTTGGCAGTATTTAATCAAGTCAACTGAAGACAACCAGATTCCATTTTCACAAGCAAAAGATGCCCTCTTTGGAATTGCATTGAAAAACAGGCTAAGGGAATGGCTTTTCGAAAGAATTGTTCTAGGCTATAAGACGACTGAGTATGATTCACATGGCTTGTCGCTGGATTTCCGTGATAGATTTGGATGGACAGCTTTACATTGGGCAGCATATTGTGGAAGGGAAAAAATGGTTGCCACTCTGCTGTCTGCCGGGGCAAAGTCAAATTTGGTTACTGATCCCACGCCAAAAAATCCTGGCGGTTGCACTGCTGCTGATCTTGCTTATATGAGGGGTCATGATGGGTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTCAGCACTTTAATGACATGAGCTTAGCTGGAAATATAAGCGGCTCGTTGGAAACTAGCACAACTGATACAGTAAATCCTGCAAGCCTTACTGATGACCAGCAGAACATGAAGGACACATTGGCAGCTTACCGAACTGCTGCTGATGCAGCTGCCCGCATACAGGCTGCATTTAGGGAGCACAATCTAAAACTGAGAACTAACGCAGTTATGTCTTCCAATCCAGAGGCTGAAGCACGCAAAATAGTTGCAGCAATGAAAATTCAGCATGCGTTCAGGAACTTCGAGACAAAGAAAATGATGGGAGCTGCTGCACGCATTCAATGTACATTCCGCACATGGAAGATTCGTAAAGAATTTCTCCTCATGCGTCGCCAGGCTGTTAAAATTCAAGCTGCTTTCCGGTGCTTTCAACTACGGAAGCATTATCGCAAAATTCTTTGGTCTGTAGGTGTGGTTGAGAAAGCAGTGCTGCGTTGGCGTTTGAAGAGAAGGGGCTTCCGAGGGCTCCAGGTCAGAGCTGTTGAAGTGGGAAATGGAGATCAGGATAAGGAAAGTGTTGTAGAGGAGGAATTCTTTAAGACTGGTAGGAAACAGGCTGAAGAACGTGTTGAAAGATCAGTGGTAAGGGTTCAGGCCATGTTCCGTTCCAAGAAAGCACAAGAAGAGTATAGGAGGATGAAAGTGGCCCTAGATCAAGCAAAGCTGGAACGGGAATACGAACAACTTCTTAGTACTGAAGTTGACATGGAACTGAAGGCATAG 2778 0.4251 MANNLAAQLVGSEIHGFHTLQAFNWSKLFPRFDKSSGKRKPTIALHGYLDVRSILEEAGTRWLRPNEIHAMLCNNKYFPINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNSNFVRRCYWLLDKSMEHIVLVHYRETQEMQGSPVTPVNSHSSSVSDPPAPWVVLDEIDSGTTTTYAADMSDNVKDKSHELRLHEINTLEWDDLVDANDHNASSMPNGGSVAYFNQQDQILLNGSFSNVVNNLSAEISSFNCHPLPIAGSDSVTYNFSESATLQMMGNQANPNEQRNNIVSLSAGSFDPLVSERLQSQDSFGMWVNHIMSDSPCSVDDPALESPVSSVHEPYLSPVVDGQQISQPEQVFTITDVSPTWVSSSEKSKVLVTGFFHKDYMHLSKSNLLCVCGDVSVPAEIVQVGFYRCWVPPHSPGIVNLYLSLDGHKPISQVVNFEYRTLVLHDPTAAMEENNNWDEFRLQMRLAYLLFAKQLSLDVISCKVPPNRLKEARQFALRTSFISNSWQYLIKSTEDNQIPFSQAKDALFGIALKNRLREWLFERIVLGYKTTEYDSHGLSLDFRDRFGWTALHWAAYCGREKMVATLLSAGAKSNLVTDPTPKNPGGCTAADLAYMRGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTTDTVNPASLTDDQQNMKDTLAAYRTAADAAARIQAAFREHNLKLRTNAVMSSNPEAEARKIVAAMKIQHAFRNFETKKMMGAAARIQCTFRTWKIRKEFLLMRRQAVKIQAAFRCFQLRKHYRKILWSVGVVEKAVLRWRLKRRGFRGLQVRAVEVGNGDQDKESVVEEEFFKTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKVALDQAKLEREYEQLLSTEVDMELKA 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01734 925 SUPERFAMILY Ankyrin repeat 596 671 IPR036770 -
Vimu7g01734 925 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515
Vimu7g01734 925 Gene3D - 594 677 IPR036770 -
Vimu7g01734 925 ProSiteProfiles IQ motif profile. 771 800 IPR000048 GO:0005515
Vimu7g01734 925 Pfam IQ calmodulin-binding motif 774 791 IPR000048 GO:0005515
Vimu7g01734 925 Pfam IQ calmodulin-binding motif 796 815 IPR000048 GO:0005515
Vimu7g01734 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 714 821 IPR027417 -
Vimu7g01734 925 ProSiteProfiles IQ motif profile. 718 747 IPR000048 GO:0005515
Vimu7g01734 925 Coils Coil 888 908 - -
Vimu7g01734 925 ProSiteProfiles CG-1 DNA-binding domain profile. 51 177 IPR005559 GO:0003677
Vimu7g01734 925 Gene3D Immunoglobulins 388 483 IPR013783 -
Vimu7g01734 925 FunFam Calmodulin-binding transcription activator 5 389 485 - -
Vimu7g01734 925 ProSiteProfiles IQ motif profile. 794 818 IPR000048 GO:0005515
Vimu7g01734 925 Gene3D - 768 818 - -
Vimu7g01734 925 SUPERFAMILY E set domains 394 481 IPR014756 -
Vimu7g01734 925 SMART iq_5 793 815 IPR000048 GO:0005515
Vimu7g01734 925 SMART iq_5 874 896 IPR000048 GO:0005515
Vimu7g01734 925 SMART iq_5 770 792 IPR000048 GO:0005515
Vimu7g01734 925 Pfam CG-1 domain 58 170 IPR005559 GO:0003677
Vimu7g01734 925 ProSiteProfiles IQ motif profile. 876 904 IPR000048 GO:0005515
Vimu7g01734 925 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 50 902 - -
Vimu7g01734 925 SMART CG_1_2 54 172 IPR005559 GO:0003677
Vimu7g01734 925 SMART ANK_2a 646 675 IPR002110 GO:0005515
Vimu7g01734 925 SMART ANK_2a 607 636 IPR002110 GO:0005515
Vimu7g01734 925 ProSiteProfiles Ankyrin repeat region circular profile. 607 635 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01734 Vimu-Chr7 15983143 15990502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01734 54 908 CAMTA Transcription Factor Family AT3G16940 52.894 0.0 893
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vimu7g01734 CG-1 3.2e-44 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01734 K21596 - gmx:100793970 1537.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01734 7 15983143 15990502 Vimu7g01734 7 15983143 15990502 ECH
Vimu7g01734 7 15983143 15990502 Vimu10g00125 10 696634 707555 PCT