Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01714 ATGGGAACTCCACCTCCGGATGAACTCGTGAAGAAGATCCAACAGTTAGAAGAAGGACACGCGCACTTGAAGCAAGAAATGTCAAAGCTCAAACTCTCCGATGTGAGGCATGGACATCGCCAGAGCGTTCCAGATTGGGCGCTCCGCCGAGGAGGCGGACTGATGCGCAGGCAGCTGCGTGGAAGAGAGGTTCGTGTTCCTTCAAACAATCCTCGCCGCTGCAGAGAGAGAGCCGCGGTGGCGGCGATCCTCAAATTCATGGCGGCGGCGGAGGAGGTGGAGGAGAAGGAGAAGGAGAAGGTGCTACTCCGTGCCGTGTATCTTAATATTTTGCAGTCAATGGGACAGTCTGTTCATATATTGGATCTTAACTGTCGCATAATATACTGGTCAGTCTTTGTCTCAATGCGCATCGCGAACCGTAGTGCGGAAAATCTGTATGGTTATACAGCAGAGGAAGCTTTAGGGCGGGATGGGATTGAGCTGCTTGTAGACCCTAGGGATTTGGGCATGGCCAATGATACAGTTAACCGTGTAATGATGGGAGAGAACTGGACGGGGCAATTTCCGGTCAAGAATAAGATGGGAGAGAACTTCATAGCTGTAGCGACTAATACACCTTTCTATGATGATGATGGAAGCTTAGTTGGGATAATTTGTGTCTCTTGTGATTCACGGCCTTTTCTTGAAATGAAAGTTCCGATGTCTGGTGTAAGGAACACTGAGTTAGATTTGGACTCGGGCGGAACTCGATCTAGAAGTAGCATTACGAATAAACTTGGCATTGATACTCAGCAGCCACTTCAAGTTGCTCTTGCGTCGAAAATTTCAAATTTGGCATCAAAGGTGAGTAACAAAGTAAAGTCAAGGATCTGGACGGGAGAAAATAATGTGGATCGTGAAGTTGGAAGTGGTGAAAGTCATCATTCTGAGCATAGTTTGTCGGAATCTGTTCTTTCGGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACCCCCAGAGGTGAGGTGGCACCGTCCCATTTTGGTGTGCTTTCTCACGGCGAAGAAAAATCCCAGGGGAAATCTTCGAGAGGGTCTGGTGACGAGAGTGAAGGAAAATCTATTCACAAAATCATACCTGCTAAGGCTGAAGCCTGGATTCAAAGGAAAACATTATCGTGGCCATGGAGAACAAAGGACAGAGAAGGTTCGGATGGATCAGAGGGAACCAATGTTCGAGTTACTGGGCCCTGGAGACAGAATGATCGAGAAAATGAATCAGTTAATCAGAAGATTCTGTCTTCTAGCTTGAAGCAAGAAAGCCAGGGAGGTGAAAGTAATCGCCCTACTAACAGTGAAGTTTCAGGATCCTGGTCCTCCTTTAATGTTAACAGCACAAGCAGTGCCAGCAGCTGTGGGAGTGCTGGCAGTTGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGGCAAGGCATCATAGAATTTCTGGTTGTCCTGCGAAAAGAGGATGGCAATTCTAAGCCAGACAACGATGTTGCCGTTAAAGTTTTCTCAAAGCAAGAATATTCAGATGATGTGATATTGTCCTTCAGACAAGAGGGGGTGGGTTATGAAGAAGCAGTGGGTGGTGCACTGCCGTTACAGCATCCGCTTTGGCTAGTAAAAGGGCTATGCTTGGCAGACCCCTACAATATCTTGTCTTACATTGATTTGACAACATTTTTCTCGTATGAAGGTGTCTGTAATGAAAAGACTTCGACACCCAAATATTCTTCTCTTTATGGGGGCCGTGACTTCATCTCAACGTCTCTGCATCGTGACAGAGTTTCTCCCACGGCGCGGGGCGTAAATTATCTTCATCATTCTAACCCACCTATCATCCACAGAGATTTGAAGTCTTCAAATCTTCTAGTTGATAAGAACTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGAGTTAAGCATGAAACATATCTCACAACTAAGACTGGCAGGGGCACGCCCCAATGGATGGCACCCGAAGTTCTTCGTAATGAACCCTCCGATGAGAAATCTGACGTTTACAGCTTTGGAGTGATACTATGGGAAATTGCAACTGAAAAGATACCTTGGGATAATCTCAACTCAATGCAGGTGATTGGTGCTGTAGGATTCATGAATCAACGGCTAGAAATTCCAAAAAATGTCGATCCACGGTGGGCTTCTATAATTGAGAGCTGCTGGCACACCGATCCAGCATGCCGGCCAACGTTCCCGGAACTGCTTGAAAGGCTTAGAGAGCTGCAAAAACAGTATGCCATCCAGTTCCAGGCAACACGATCCGCCAGCAAGGAAAGCACCCAAAAGGAGTCATAG 2397 0.4664 MGTPPPDELVKKIQQLEEGHAHLKQEMSKLKLSDVRHGHRQSVPDWALRRGGGLMRRQLRGREVRVPSNNPRRCRERAAVAAILKFMAAAEEVEEKEKEKVLLRAVYLNILQSMGQSVHILDLNCRIIYWSVFVSMRIANRSAENLYGYTAEEALGRDGIELLVDPRDLGMANDTVNRVMMGENWTGQFPVKNKMGENFIAVATNTPFYDDDGSLVGIICVSCDSRPFLEMKVPMSGVRNTELDLDSGGTRSRSSITNKLGIDTQQPLQVALASKISNLASKVSNKVKSRIWTGENNVDREVGSGESHHSEHSLSESVLSDQREDANSSGASTPRGEVAPSHFGVLSHGEEKSQGKSSRGSGDESEGKSIHKIIPAKAEAWIQRKTLSWPWRTKDREGSDGSEGTNVRVTGPWRQNDRENESVNQKILSSSLKQESQGGESNRPTNSEVSGSWSSFNVNSTSSASSCGSAGSCAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGIIEFLVVLRKEDGNSKPDNDVAVKVFSKQEYSDDVILSFRQEGVGYEEAVGGALPLQHPLWLVKGLCLADPYNILSYIDLTTFFSYEGVCNEKTSTPKYSSLYGGRDFISTSLHRDRVSPTARGVNYLHHSNPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRVKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWEIATEKIPWDNLNSMQVIGAVGFMNQRLEIPKNVDPRWASIIESCWHTDPACRPTFPELLERLRELQKQYAIQFQATRSASKESTQKES 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01714 798 Coils Coil 13 33 - -
Vimu7g01714 798 FunFam PAS domain-containing protein tyrosine kinase family protein 613 790 - -
Vimu7g01714 798 CDD PAS 114 224 IPR000014 -
Vimu7g01714 798 MobiDBLite consensus disorder prediction 320 335 - -
Vimu7g01714 798 Pfam Protein tyrosine and serine/threonine kinase 591 772 IPR001245 GO:0004672|GO:0006468
Vimu7g01714 798 Pfam PAS fold 139 221 IPR013655 GO:0005515
Vimu7g01714 798 Gene3D Transferase(Phosphotransferase) domain 1 614 798 - -
Vimu7g01714 798 MobiDBLite consensus disorder prediction 352 373 - -
Vimu7g01714 798 SMART pas_2 105 181 IPR000014 -
Vimu7g01714 798 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 319 778 - -
Vimu7g01714 798 NCBIfam PAS domain S-box protein 107 221 IPR000014 -
Vimu7g01714 798 ProSiteProfiles PAS repeat profile. 140 183 IPR000014 -
Vimu7g01714 798 MobiDBLite consensus disorder prediction 301 319 - -
Vimu7g01714 798 ProSiteProfiles Protein kinase domain profile. 495 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01714 798 Gene3D PAS domain 115 226 - -
Vimu7g01714 798 PRINTS Tyrosine kinase catalytic domain signature 699 721 IPR001245 GO:0004672|GO:0006468
Vimu7g01714 798 PRINTS Tyrosine kinase catalytic domain signature 680 690 IPR001245 GO:0004672|GO:0006468
Vimu7g01714 798 PRINTS Tyrosine kinase catalytic domain signature 743 765 IPR001245 GO:0004672|GO:0006468
Vimu7g01714 798 PRINTS Tyrosine kinase catalytic domain signature 633 651 IPR001245 GO:0004672|GO:0006468
Vimu7g01714 798 MobiDBLite consensus disorder prediction 298 377 - -
Vimu7g01714 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 639 651 IPR008271 GO:0004672|GO:0006468
Vimu7g01714 798 SUPERFAMILY Protein kinase-like (PK-like) 488 781 IPR011009 -
Vimu7g01714 798 MobiDBLite consensus disorder prediction 392 453 - -
Vimu7g01714 798 SUPERFAMILY PYP-like sensor domain (PAS domain) 109 221 IPR035965 -
Vimu7g01714 798 CDD STKc_MAP3K-like 522 772 - -
Vimu7g01714 798 MobiDBLite consensus disorder prediction 403 453 - -
Vimu7g01714 798 SMART serkin_6 495 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01714 Vimu-Chr7 15815254 15821789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01714 1 789 MAP Kinase Kinase Kinase AT3G06620 47.458 0.0 686
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vimu7g01714 PK_Tyr_Ser-Thr 2.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01714 - - pvu:PHAVU_003G114400g 1021.15