LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g01681	ATGGTTTGGCGAAAGATGTCCCTTTTCAAGATGAACATCATCAATGTTATTCTCATTCTCCCTTTCCTATGTTTCTATGTTTTGAGTACTTTCTTCATTAAAGCATCAGCAGTAAATGCAGCATATGAGTCTGATAGAATAATCGATCTTCCTGGTCAACCTTCAACCCCTTCAATCTCACACTTTTCAGGTTACATCACTGTCAATGAAAACCATGGAAGGGCCCTTTTCTACTGGTTCTTTGAAGCTCAGTCTCAACCCTCCAACAAGCCTCTTCTTCTCTGGCTCAATGGAGGACCTGGATGCTCCTCTATTGGCTATGGTGCCGTTGTTGAGATTGGACCTCTTTTAGTCAGCAAAAACGGGGAAGGACTACATTTCAACACATATTCCTGGAATCAAGAAGCAAATTTGTTATTTATTGAATCCCCTGTTGGAGTTGGATTTTCTTATACCAACACCTCTTCTGACACCATCTTAGAGGATAACTTAGTTGCTGAGGATGCCTACAATTTCTTGGTGAATTGGCTACAAAGATTCCCTCAGTTCAAATCCCGGGAATTTTTTATATCAGGAGAAAGCTACGGTGGTCACTATATCCCTCAGCTTGCAGAGTTAATCTTTGATCGAAACAGAGATGGCCACAAATACCCTTTTATCAATCTTAAAGGTTTTATTGTAGGTAACCCAGAGACTGATGATTACTATGACTACAAAGGCCTTCTGGAATATGCATGGAGCCACGCAGTTATATCAGATCAGCAATATGAGAAAGCAAAACAAGTATGCGATTTTAAACAATTTGAATGGTCCAATGAATGCAACAAGGCCATGAACGAAGTCTTCCGAGATTACTCAGAAATTGACATATACAACATTTATGCCCCGGCATGTCGTTCAAACAGTACATCCTCAATGTCTGGTGATAGCAACAGTGACGGCCCTGAATCATTTACCAAGGTGAGAAATTATCATAGAGAAGGAAGGATGAGAATTTTTGGGGGCTATGACCCTTGTTATTCCAATTATGCAGAAGAGTATTTCAACAGAAAAGACGTTCAATCATCATTTCATGCAGACACTAAGAGAGCCACTAACGTGGCATGGAAGGTTTGCAATAATTCCATATTGAGGGCTTACAACTTCTCTGTGTTCTCGGTGCTACCCATCTACACCAAACTCATCAAGGGTGGGCTTAAGATATGGATATACAGTGGAGACGCAGATGGAAGAGTGCCAGTGATAGGGACAAGATATTGCGTTGAGGCTCTTGGATTACCTCTCAAGTCTAGTTGGCGAACTTGGTACCATGATAATCAGGTTGGAGGAAGAACAGTGGAATATGAAGGATTGACGTATGTGACAGTGAGAGGAGCTGGTCACTTGGTGCCATTGAACAAGCCTAGTGAAGCTCTCACTCTTATTAATTCCTTCTTAAAAGGAGATCATCTTCCTACTCGTGGATAA	1467	0.4124	MVWRKMSLFKMNIINVILILPFLCFYVLSTFFIKASAVNAAYESDRIIDLPGQPSTPSISHFSGYITVNENHGRALFYWFFEAQSQPSNKPLLLWLNGGPGCSSIGYGAVVEIGPLLVSKNGEGLHFNTYSWNQEANLLFIESPVGVGFSYTNTSSDTILEDNLVAEDAYNFLVNWLQRFPQFKSREFFISGESYGGHYIPQLAELIFDRNRDGHKYPFINLKGFIVGNPETDDYYDYKGLLEYAWSHAVISDQQYEKAKQVCDFKQFEWSNECNKAMNEVFRDYSEIDIYNIYAPACRSNSTSSMSGDSNSDGPESFTKVRNYHREGRMRIFGGYDPCYSNYAEEYFNRKDVQSSFHADTKRATNVAWKVCNNSILRAYNFSVFSVLPIYTKLIKGGLKIWIYSGDADGRVPVIGTRYCVEALGLPLKSSWRTWYHDNQVGGRTVEYEGLTYVTVRGAGHLVPLNKPSEALTLINSFLKGDHLPTRG	488

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g01681	488	ProSitePatterns	Serine carboxypeptidases, serine active site.	190	197	IPR018202	GO:0004185
	Vimu7g01681	488	SUPERFAMILY	alpha/beta-Hydrolases	44	485	IPR029058	-
	Vimu7g01681	488	PRINTS	Carboxypeptidase C serine protease (S10) family signature	128	140	IPR001563	GO:0004185\|GO:0006508
	Vimu7g01681	488	PRINTS	Carboxypeptidase C serine protease (S10) family signature	141	151	IPR001563	GO:0004185\|GO:0006508
	Vimu7g01681	488	PRINTS	Carboxypeptidase C serine protease (S10) family signature	176	201	IPR001563	GO:0004185\|GO:0006508
	Vimu7g01681	488	PRINTS	Carboxypeptidase C serine protease (S10) family signature	451	464	IPR001563	GO:0004185\|GO:0006508
	Vimu7g01681	488	Gene3D	-	339	376	-	-
	Vimu7g01681	488	FunFam	Carboxypeptidase	41	300	-	-
	Vimu7g01681	488	FunFam	Carboxypeptidase	387	481	-	-
	Vimu7g01681	488	Gene3D	alpha/beta hydrolase	39	309	IPR029058	-
	Vimu7g01681	488	Pfam	Serine carboxypeptidase	51	481	IPR001563	GO:0004185\|GO:0006508
	Vimu7g01681	488	ProSitePatterns	Serine carboxypeptidases, histidine active site.	451	468	IPR033124	GO:0004185
	Vimu7g01681	488	Gene3D	-	387	481	-	-
	Vimu7g01681	488	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	48	468	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g01681	Vimu-Chr7	15606191	15608691	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g01681	340	484	Calmodulin-binding Proteins	AT2G22960	28.767	4.75e-15	71.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu7g01681	7	15606191	15608691	Vimu7g01681	7	15606191	15608691	ECH