Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01668 ATGATCGTGAGTCCGAAGATGGTAGCGGAAGCGGAAATTATCTGTCAGCAGTCCATTCCGATGTTGGACGTCAAGTATCATATTTGCGTTGCGCAAGAACACAACGTTGAGGTCGTGGTTTCGCCCAAATCGCCTTCACCTTCTGTTCCGATCTTTGGCCAAGCAGTGAATCACTCGGATTTCATTAAGCATTCAATTTCGGAGACCCCTGCGGCGAGTTTTGTTCCAAATGCCCGTTCTGGTAGCTATACTGAGATTGGGCCGCGGGTTTCTATGGATGATGAACACATCTGTATTGACGATCTAGGTGCTCATCTTGGATTTGTGTTCAAGTACCCGATACGGAGTGCTTTTTATGCTGTTTTTGATGGTCATGGAGGACCTGATGCAGCTGCTTTTGTTAAGAGGAATGCTATGAAATTGTTTTTTGAAGATGCGGACATGCTGCAGACATATGATGATACTGATTCGTTCTTTCTAGAGAAGTTAGAGGATTCCCATAGGAGAGCTTTTCTACGGGCAGATATTGCCTTGGCTGATGAACAAACTGTTAGTAGTTCGTGTGGAACGACTGCATTGACTGCCCTTGTACTTGGAAGGCACTTGCTTGTTGCTAATGCTGGTGACTGCCGAGCAGTTCTTTGCCGGAGGGGTGTGGCTGTTGAGATGTCTAACGATCACAGGCCAAGTTTTCTGCCAGAACGGCTGAGGGTGGAGGAGATAGGTGGATTCATTGATGATGGATACCTCAATGGTTATCTTTCAGTAACCCGTGCCCTTGGAGATTGGGACTTGAAATTTCCACTCGGTGCTGCATCTCCTCTTATTGCTGAGCCAGATGTACGACTGGCTAAATTGACGGAGGAGGATGAGTTCTTGATCATTGGGTGTGATGGGATTTGGGATGTAATGTCTAGCCAAGTTGCAGTTAGTCTTGTTCGCCGAGGATTAAGAAGGCATAATGACCCACAGCAGTGTGCTATGGAACTAGTCAAGGAAGCATTGCGCCTGCATACATCGGATAATCTTACTGTGATTGTTGTATGTTTATCGCCCATTGAAAGCATTGTTGAATCATGTCCTCCCCAGAGGCGAAGATTCAAAGCCTGCAACCTGACCGAAGAGGCCCGTAATAGGTTGAAGAGCCTTATTGAGCGAAATTGA 1164 0.4648 MIVSPKMVAEAEIICQQSIPMLDVKYHICVAQEHNVEVVVSPKSPSPSVPIFGQAVNHSDFIKHSISETPAASFVPNARSGSYTEIGPRVSMDDEHICIDDLGAHLGFVFKYPIRSAFYAVFDGHGGPDAAAFVKRNAMKLFFEDADMLQTYDDTDSFFLEKLEDSHRRAFLRADIALADEQTVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRRGVAVEMSNDHRPSFLPERLRVEEIGGFIDDGYLNGYLSVTRALGDWDLKFPLGAASPLIAEPDVRLAKLTEEDEFLIIGCDGIWDVMSSQVAVSLVRRGLRRHNDPQQCAMELVKEALRLHTSDNLTVIVVCLSPIESIVESCPPQRRRFKACNLTEEARNRLKSLIERN 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01668 387 PANTHER PROTEIN PHOSPHATASE 2C 74 348 IPR015655 GO:0004722|GO:0006470
Vimu7g01668 387 SMART PP2C_SIG_2 94 350 IPR001932 -
Vimu7g01668 387 ProSiteProfiles PPM-type phosphatase domain profile. 79 350 IPR001932 -
Vimu7g01668 387 FunFam Probable protein phosphatase 2C 22 63 353 - -
Vimu7g01668 387 Pfam Protein phosphatase 2C 89 342 IPR001932 -
Vimu7g01668 387 SUPERFAMILY PP2C-like 72 352 IPR036457 -
Vimu7g01668 387 Gene3D - 60 353 IPR036457 -
Vimu7g01668 387 SMART PP2C_4 69 348 IPR001932 -
Vimu7g01668 387 ProSitePatterns PPM-type phosphatase domain signature. 118 126 IPR000222 GO:0043169
Vimu7g01668 387 CDD PP2Cc 79 350 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01668 Vimu-Chr7 15490872 15492779 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01668 1 384 PP2C-type Phosphatase Gene Family AT1G48040 55.584 1.27e-147 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01668 K14803 - gmx:100775577 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01668 7 15490872 15492779 Vimu7g01668 7 15490872 15492779 ECH
Vimu7g01668 7 15490872 15492779 Vimu2g01439 2 9767250 9769083 PCT