Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01644 AGTTTAGTTGTCAAGTCACAAAACAGTTTCGCCATCCCATCGAAATCGGGCAAAATGTCGCGGAAGGGTTTGATGGAGCAAGACCTGAGTAAGTTGGATGTGACAAAGTTGCATCCACTTTCTCCAGAAGTCATATCTCGGCAAGCTACTATTAATATTGGCACTATTGGTCATGTGGCACATGGCAAGTCAACAGTTACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATCACAATCAAGCTTGGCTATGCAAATGCAAAAATATACAAGTGTGAAGATGAACGATGTCCAAGGCCTATGTGCTACAAGGCTTATGGAAGTGGGAAAGAAGATAGTCCAATGTGTGATGTGCCGGGGTTTGAAAACAGCAAGATGAAATTGCTGAGACATGTCTCATTTGTGGATTGTCCGGGACATGATATTCTCATGGCTACTATGCTTAATGGAGCAGCAATCATGGATGGAGCATTATTACTCATAGCTGCTAATGAAAGCTGCCCACAACCACAAACCTCTGAGCACTTAGCTGCTGTGGAAATTATGCGTCTACAGCATATAATAATCCTTCAGAACAAGGTTGACTTGATTCAAGAAAATGTGGCAATCAATCAGCATGAAGCAATTTCAAAGTTTATACAGGGAACTGTTGCCGATGGTGCACCAGTAGTACCCATTTCTGCACAGTTAAAGTACAATATTGATGTTGTGTGCGAGTATATTGTGAAGAAGATCCCAATCCCTGAGAGGAACTTTGTTTCTCCACCTAACATGATTGTAATCCGGTCATTTGATGTCAATAAACCTGGTTTTGAGGTTGATGAAATAAAAGGAGGTGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTGAAGGTGAATCAATTCATTGAAGTTCGACCTGGGATTGTTGTTAAAGATGAGAGTGGAAATATCCGATGCACACCAATATACTCAAGAATAGTTTCATTGTATGCTGAACAAAATGAGCTTCAATTTGCTGTACCTGGAGGCCTAATCGGTGTTGGGACAACAATGGATCCCACACTGACACGTGCTGATAGGTTGGTAGGTCAAGTTCTAGGAGAGGTTGGATCACTACCTGAGGTAAACTTTTTCCTGCTTAGACGGCTTCTTGGGGTCCGAACAAAAGGGTCAGAGAGACAAGGGAAGGTATCGAAGCTGGCGAAGGGAGAGATGCTAATGTTGAACATAGGATCAATGTCAACAGGGGCTAGAGTAATTGCTGTGAAAAATGACTTGGCAAAGTTGCAACTTACATCCCCTGTGTGCACTAGCAAGGGTGAGAAGATAGCACTTAGTCGACGTGTTGAGAAGCATTGGCGTCTTATTGGATGGGGTCAAATCCAAGCAGGAATCACCCTTGACGTCCCTCCTGCCCCCCATCTCAGTTGA 1413 0.4338 SLVVKSQNSFAIPSKSGKMSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDSPMCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAISKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVNFFLLRRLLGVRTKGSERQGKVSKLAKGEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPPAPHLS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01644 470 CDD eIF2_gamma 51 250 IPR044128 GO:0005525
Vimu7g01644 470 MobiDBLite consensus disorder prediction 1 15 - -
Vimu7g01644 470 MobiDBLite consensus disorder prediction 1 22 - -
Vimu7g01644 470 CDD eIF2_gamma_III 368 455 IPR015256 -
Vimu7g01644 470 FunFam Eukaryotic translation initiation factor 2 subunit gamma 48 250 - -
Vimu7g01644 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 252 IPR027417 -
Vimu7g01644 470 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 48 249 IPR000795 GO:0003924|GO:0005525
Vimu7g01644 470 Gene3D - 48 250 IPR027417 -
Vimu7g01644 470 Pfam Initiation factor eIF2 gamma, C terminal 368 455 IPR015256 -
Vimu7g01644 470 SUPERFAMILY Translation proteins 250 364 IPR009000 -
Vimu7g01644 470 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 19 463 - -
Vimu7g01644 470 Pfam Elongation factor Tu GTP binding domain 50 246 IPR000795 GO:0003924|GO:0005525
Vimu7g01644 470 Gene3D Translation factors 252 364 - -
Vimu7g01644 470 Pfam Elongation factor Tu domain 2 278 360 IPR004161 GO:0005525
Vimu7g01644 470 FunFam Eukaryotic translation initiation factor 2 subunit gamma 251 364 - -
Vimu7g01644 470 CDD eIF2_gamma_II 251 364 IPR044127 GO:0000049
Vimu7g01644 470 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 368 456 IPR009001 -
Vimu7g01644 470 PRINTS GTP-binding elongation factor signature 52 65 IPR000795 GO:0003924|GO:0005525
Vimu7g01644 470 PRINTS GTP-binding elongation factor signature 187 196 IPR000795 GO:0003924|GO:0005525
Vimu7g01644 470 PRINTS GTP-binding elongation factor signature 133 143 IPR000795 GO:0003924|GO:0005525
Vimu7g01644 470 PRINTS GTP-binding elongation factor signature 149 160 IPR000795 GO:0003924|GO:0005525
Vimu7g01644 470 Gene3D Translation factors 365 459 - -
Vimu7g01644 470 FunFam Eukaryotic translation initiation factor 2 subunit gamma 365 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01644 Vimu-Chr7 15289676 15294453 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01644 19 467 Eukaryotic Initiation Factors Gene Family AT1G04170 88.362 0.0 844
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01644 K03242 - gmx:100805852 879.782