Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01640 GGGTTTGTAATTTGGACGTTGTTGCAACACGTTAGATTTTCATTCATGGAGGCTGAGTTTGGGGGTAAGAATCAGTACTTGTATGGACCTGTGGTGTCAGGAATGAAGAAAGCTGTTGGGAATGGGAAGAGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGTGATCTTTTCACCGCTCAGCCTCTCAATTCAGTGCCATCAGACTGTAGGAGTCGCCAGTTTTTCCCACCACATCCTGAAATTCCTGCGAAAAAGGCCAATCTTGCAAACGATTTCTCTTCTTCTTTAATCAACCCAGGTGAGGGAAAGAAGGAATTGGAGAAAAGGAGGAGGCGTGTTATAGGGGAAGGGATGAATGATGAAGGTGGTTCTCTTAGTTTGAACCTTGGGGGTCACGGTTACCCTTTCATGGTGGAAGGAGAGGAAAAAAGTGGAAAGAAGACAAAGGTAATTGGGACTACTACTGCTGCTGCTACCACCTCTAACCGTGCTGTTTGTCAGGTGCAAGATTGTACGGCTGATCTTGGTAATGCCAAGGATTACCACCGTCGGCACAAGGTCTGTGATGTTCATTCTAAGGCCACTGTGGCACTAGTGGGAGATGTTATGCAACGTTTCTGTCAACAGTGTAGCAGGTTTCATGTCCTTCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTGGCAGGCCATAACAGGAGGAGGAGGAAAACTCATCCCGATGTTACTGTTGTTAATGAAGGCTCTCATAACAGTGGAAGGGGCAGTAGCTATCTGTTGATGAGTCTGTTACGGATACTGACCAATTTGCATACAAATGGCTCAGATCATACAAGGAACCAGGATATACTCTCTCATCTTCTGAGGAACTTGGCAAGTATGGCTGCTCCAAATAATGATAGAACTTTAGCCTCCTTATTGGAGAACTCTAAAGGTTTGTTAAATGATGGGACACCTGGAGGTGCTCATGATGAACCCAACCTTCATTCAAACACTCCTGAAGCTTCCAGACCGTCTGGTTCTTCCATTCAGATTGATAATGGCTTCATCAGTCAGGACCCTCCAATATCTATGGCACAGTGTGAAACAAGGCCTACTAATGGTGGAGTAGAAAATTTGAGACCACCTTCAGGAGCACCATTCTCAAGTATAAGTCAATCAAAGGGAAATCTTCCATGCCAATTAACTGCTACTGAGACTACACTTAGAAGGAACAACTTAAATAACGTTGACCTGAATAACGTATACAGTGATGTGCAGAATACTGATGAAAATCATAAGAAGCCTTATCCTCACGTAGCATCAGAGATGGGATCTAGTGATCTTCCCTCATGGTTGCAATGTGCTTCTCTCAAATCAAGTGGAGAAGCTAAGGACCATTATTTGAGGTCTGTTTCTCTGGTTCATCTGGTTTTTTATTGGTGTGTGGGTCTGTTTTTGACGGCTGTCTCAGAAGATTTATTTATTGAAATGTTGTTTGTTAACTGTTTACAGAGTTGCACAGATCGAATTGTTTTTAAACTCTTTGGAAAGAATCCAAGTAATTTTCCCCTTCTTCTCCGTTCACAGATTCTCAACTGGTTATCCCACAGTCCCACAGAGATAGAGAGCTATATAAGGCCAGGTTGTATCATATTAACGATATATCTTTGTCTTGAAAAATCTGCATGGGAAGAGCTCTGCTGTAATCTAGGATCCAGCTTGAGAAAGCTTCTTAGCTCGTCAAATGATACATTTTGGAGAACAGGGTGGGTATTTGCAAGGGTGCAGCATTCTGTGGCTTTTCTGTGTAACGGTCAAGTAGTCTTAGATGTGCCCTTGTGTCTCAAAAGCTCACATCATTGTACGATTTCATGCATTAAACCACTTGCTGTTCCTGCAAGTGCTAGGGCTCACTTTATTGTGAAAGGTTGCAACCTTTCCCAGTCTAGTACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATGTGGTACATGCTAGTTGTCATGATTTGATTGGTGAAGATGATGAATCCATTCAGCATCTCAACTTCTCTTGTCATATACCAGATGTAACTGGGAGGGGTTTTATTGAGGTGGAAGACCATTGTCTTAGAAGCTGTTCCTTTCCATTTATAGTTGCAGAGAAAGAGGTTTGTTCAGAGATCTGCAAGCTGGAGAATGTGATTGAGGCTGCTGAAACCACTATTGATTTCCAGATTAAAAACCAACAAATGGAAGAAAAGACTCAGGCTCTTCATTTCTTGCAAGAAATGGGTTGGCTTCTTCATAGAAGTCGTATGAAAGTTAGGCTAGGTCCCATGGCTCCTATCCATGATCTCTTCCAATTTAATCGGTTCACGTGGCTTGTTGACTTCTCCATGGACCATGGTTGGTGTGCTGTGATGAAAAAACTATTGGATATTATATTTGATGGGGGTGTTGATACAGGAGAACAGGCCTCCATTGAGCTTGCATTGTTAGACTTGAGTCTTCTACACAAAGCTGTGAAGAGAAACAATAGACCTATGGTAGAACTACTATTAAGATTTGTGCCAGTTAAAACATCAGATGGTGCTGACAGTGAGGTGAAGCAAGTTGAAAAGGCCTCCGACAGATTCTTATTTAGACCTGATACTGTTGGGCCAGCTGGATTTACTCCTCTTCATGTTGCAGCAACTATGAGAGGCTCAGAGAACGTGTTGGATGCATTAACTGATGATCCAGGAATGGTAGGAATTGAAGTATGGAAAAGTGCCCGAGATAGTGCAGGTTTGACCCCCAACGACTATGCATGTCTTAGGGGCTATTACTCTTACGTTCAACTTGTCCAGAGGAAGACGAACAGAAAAGGTGAAAGACTACATGTGGTTGATATCCCTGGCACTGTTGCAGACGGTGGTTTCAGAAAGCAGAAGCAATCAGGTAAAGTTTCTAGTTTACAGACAGAGAAGATTGAAACCACAGAAATGGGAAGTAACTGTAGGGTGTGCCAGCAGAAGTTGGTTTATGGTGGCATAAGAACTGGTGTGGTTTATAGGCCAGTCTTGCTGTCCATGGTGGCCATAGCAGCTGTGTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCTAGAGTTTACTATGTGTTCCAGCCTTTCAACTGGGAATCATTGGAGTATGGAACAATATAA 3165 0.4303 GFVIWTLLQHVRFSFMEAEFGGKNQYLYGPVVSGMKKAVGNGKRSLEWDLNDWKWDGDLFTAQPLNSVPSDCRSRQFFPPHPEIPAKKANLANDFSSSLINPGEGKKELEKRRRRVIGEGMNDEGGSLSLNLGGHGYPFMVEGEEKSGKKTKVIGTTTAAATTSNRAVCQVQDCTADLGNAKDYHRRHKVCDVHSKATVALVGDVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDVTVVNEGSHNSGRGSSYLLMSLLRILTNLHTNGSDHTRNQDILSHLLRNLASMAAPNNDRTLASLLENSKGLLNDGTPGGAHDEPNLHSNTPEASRPSGSSIQIDNGFISQDPPISMAQCETRPTNGGVENLRPPSGAPFSSISQSKGNLPCQLTATETTLRRNNLNNVDLNNVYSDVQNTDENHKKPYPHVASEMGSSDLPSWLQCASLKSSGEAKDHYLRSVSLVHLVFYWCVGLFLTAVSEDLFIEMLFVNCLQSCTDRIVFKLFGKNPSNFPLLLRSQILNWLSHSPTEIESYIRPGCIILTIYLCLEKSAWEELCCNLGSSLRKLLSSSNDTFWRTGWVFARVQHSVAFLCNGQVVLDVPLCLKSSHHCTISCIKPLAVPASARAHFIVKGCNLSQSSTRLLCALEGKYVVHASCHDLIGEDDESIQHLNFSCHIPDVTGRGFIEVEDHCLRSCSFPFIVAEKEVCSEICKLENVIEAAETTIDFQIKNQQMEEKTQALHFLQEMGWLLHRSRMKVRLGPMAPIHDLFQFNRFTWLVDFSMDHGWCAVMKKLLDIIFDGGVDTGEQASIELALLDLSLLHKAVKRNNRPMVELLLRFVPVKTSDGADSEVKQVEKASDRFLFRPDTVGPAGFTPLHVAATMRGSENVLDALTDDPGMVGIEVWKSARDSAGLTPNDYACLRGYYSYVQLVQRKTNRKGERLHVVDIPGTVADGGFRKQKQSGKVSSLQTEKIETTEMGSNCRVCQQKLVYGGIRTGVVYRPVLLSMVAIAAVCVCVALLFKSSPRVYYVFQPFNWESLEYGTI 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01640 1054 MobiDBLite consensus disorder prediction 334 372 - -
Vimu7g01640 1054 MobiDBLite consensus disorder prediction 233 256 - -
Vimu7g01640 1054 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 117 944 IPR044817 GO:0003677
Vimu7g01640 1054 Pfam SBP domain 169 242 IPR004333 GO:0003677
Vimu7g01640 1054 MobiDBLite consensus disorder prediction 316 392 - -
Vimu7g01640 1054 SUPERFAMILY Ankyrin repeat 785 942 IPR036770 -
Vimu7g01640 1054 SUPERFAMILY SBT domain 167 248 IPR036893 GO:0003677|GO:0005634
Vimu7g01640 1054 Gene3D - 160 230 IPR036893 GO:0003677|GO:0005634
Vimu7g01640 1054 ProSiteProfiles Zinc finger SBP-type profile. 166 243 IPR004333 GO:0003677
Vimu7g01640 1054 Gene3D - 797 955 IPR036770 -
Vimu7g01640 1054 FunFam Squamosa promoter-binding-like protein 14 160 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01640 Vimu-Chr7 15252468 15258617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01640 193 1053 SBP-box Gene Family AT2G47070 44.610 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vimu7g01640 SBP 7.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01640 - - gmx:100780152 1499.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01640 7 15252468 15258617 Vimu7g01640 7 15252468 15258617 ECH
Vimu7g01640 7 15252468 15258617 Vimu10g00556 10 4589275 4599891 PCT