Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01637 TGGGGTTTGACTGGCCATGTGCCACCGTGTTCACATCCAAGAGCAGATTTTGACTGCATAAGAGATCTAGTGTTTAGGTGGATTCGGGATATATATTGGCAGCTGCGAATGGCATCTGATCTAAGTTCGGGGCTGTCCAAGGAAACGTCTGTATTTGGGTTAAAAGCATGGGAACTAATGGGGATACTGGTTGGGTTGTTCATTGTAATCATTCTTGTGGTGGTATCGATATGTCTTACTTCACGAAAGAAATCCAGAAGAGTCAATGGCATGCTTCCCCTTAGCCATATGCTATCTGTTTCAGATGAAATCAAGGAAATTAGAGTTGATCAAGTTTCATCCAATAATCATCCTCAGAATGGAGCTTTTATGAGTCTGTATGACAGGTTTAGTGACAGAGACTCTGAAAAGGTTTTGATCCAACCAAAGAATGGGGAAAATAGCAGTCAATCGGGCTCATTCGTTCATCTTAAGAAAGATGATGGTGGCTCTCAATCAGGTGAAGAAAGTGGTGCCAAATCTGTTTCTACCTACAGGTCTTCTTCACATCCTATAACTGCACCATCTCCCTTGTCTGGTCTGCCTGAATTCTCTCACCTTGGATGGGGCCACTGGTTCACATTAAGGGACCTAGAACTTGCAACAAACAGGTTTTCCAAAGACAATGTTATTGGTGAAGGTGGATATGGAGTTGTTTATCAAGGCCAGTTAATTAATGGGAGCCCTGTGGCTGTTAAGAAGCTACTCAATAATCTAGGACAAGCTGAAAAGGAATTTAGAGTGGAAGTTGAGGCTATTGGCCATGTGCGACACAAGAATTTGGTTAGACTTTTGGGGTATTGCATTGAAGGGACTCACAGGTTGTTGGTTTATGAGTATGTTAACAATGGCAATTTAGAGCAATGGCTTCATGGAGCCATGAGGCAGTATGGTTTTCTTACTTGGGATGCTCGAATTAAAATTCTTCTTGGAACAGCTAAAGCGGAATTCTGTATGATTCAGAAGCACTTTTTCTTGGTAAATTTGGTTGACTGGCTCAAGATGATGGTTGGGAATAGGCGTGCAGAAGAGGTGGTAGACCCTAACATTGAGACCAGGCCTTCAACAAGTGCCCTTAAACGTGCCCTTTTGACTGCTTTGAGGTGTGTTGATCCAGATTCTGAGAAAAGACCAAAGATGAGTCAAGTTGTCCGCATGCTTGAATCAGAGGAATATCCCATACCCAGAGAGATGATATTTCAGGATCGAAGACGCCGGAAGAGTCAAACGGGAAATATGGAGGTGGAGGCTCAGAAGGAGATTTCTGATACAGAGAAGAGTGACACTCAAGATTCGAAGTCCAATGGCAGAAGGAACCAAAAGAAGTAG 1368 0.4306 WGLTGHVPPCSHPRADFDCIRDLVFRWIRDIYWQLRMASDLSSGLSKETSVFGLKAWELMGILVGLFIVIILVVVSICLTSRKKSRRVNGMLPLSHMLSVSDEIKEIRVDQVSSNNHPQNGAFMSLYDRFSDRDSEKVLIQPKNGENSSQSGSFVHLKKDDGGSQSGEESGAKSVSTYRSSSHPITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKDNVIGEGGYGVVYQGQLINGSPVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRLLVYEYVNNGNLEQWLHGAMRQYGFLTWDARIKILLGTAKAEFCMIQKHFFLVNLVDWLKMMVGNRRAEEVVDPNIETRPSTSALKRALLTALRCVDPDSEKRPKMSQVVRMLESEEYPIPREMIFQDRRRRKSQTGNMEVEAQKEISDTEKSDTQDSKSNGRRNQKK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01637 455 MobiDBLite consensus disorder prediction 141 187 - -
Vimu7g01637 455 PANTHER OS01G0323000 PROTEIN 41 328 - -
Vimu7g01637 455 SUPERFAMILY Protein kinase-like (PK-like) 188 400 IPR011009 -
Vimu7g01637 455 Pfam Protein tyrosine and serine/threonine kinase 221 326 IPR001245 GO:0004672|GO:0006468
Vimu7g01637 455 ProSitePatterns Protein kinases ATP-binding region signature. 224 247 IPR017441 GO:0005524
Vimu7g01637 455 ProSiteProfiles Protein kinase domain profile. 218 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01637 455 MobiDBLite consensus disorder prediction 411 455 - -
Vimu7g01637 455 FunFam Putative receptor-like protein kinase 200 293 - -
Vimu7g01637 455 Gene3D Phosphorylase Kinase; domain 1 199 293 - -
Vimu7g01637 455 Gene3D Transferase(Phosphotransferase) domain 1 328 411 - -
Vimu7g01637 455 MobiDBLite consensus disorder prediction 141 155 - -
Vimu7g01637 455 MobiDBLite consensus disorder prediction 167 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01637 Vimu-Chr7 15228386 15232072 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01637 192 328 Trihelix Transcription Factor Family AT1G23540 46.377 6.21e-33 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vimu7g01637 PK_Tyr_Ser-Thr 1.2e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01637 - - gmx:100793499 538.11