Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01617 ATGTGTTTTGAGAAAGTTGTTCACATGGAAGTTAGCTGGTTCGATGAAGCTGAACATTCAAGTGGAGCAATTGGAGCAAGGCTCTCTTCTGATGCAGCTGCTGTTCGAGCTTTGGTTGGGGATGCACTTGGTTTGCTGGTTCAAAATGTTGCTACAGTTGTGGGCTGTTTGGTAATTGCGTTTGAAGCAAGCTGGCAGCTTGCTCTTATAGTGCTTGCTTTGGCACCTTTATTAGGACTAAATGGCTACAAACTGTACGAGGAAGCAAGTCAAGTCGCAAGTGATGCTGTAGGGAGTATAAGAACTGTTGCCTCTTTCTGTGCTGAAAAGAAGGTGATGGAATTGTACCAGAAAAAGTGTGAAAAACCAATTAAAACGGGCATAAGACGAGGGATAATAAGTGGAATTGGTTATGGGATATCATTGTTCATGCTTTACACAGTTTATGCATGCAGTTTTTATGCTGGAGCTCGACTTGTCCTTTTTGCACTCAGCATGGCAGCTATGGGAATCTCTCAATCTGGCTCTTTGGTCCTTGATTCTGCTAAATCAAAAAGTGCTGCCGCTTCTATATTTGCTATTCTTGATCGAAAGTCACAAATTGACCCAAGTGATGACTCTGGATTGACGTTGGAAGAAGTGCAGGGAGAGATTGAATTTAAAAATGTTAGTTTCAAGTATCCTACCAGACCTGACTGGCAAGACTCAGGTCACATTAGCCTGGATGGAAAAGAAATAAAAAGCATGCAAATTAAATGGCTAAGACAGCAGATGGGTCTGGTGAGCCAAGAGCCTGTGCTGTTTAATGACACCATCCGAGCCAATATTGCATATGGCAAAGGCGGAGATGCAACAGAGGCAGAAGTTATAGCTGCAGCAGAACTGGCAAATGCTCACAACTTCACCAGTAGTTTGCAGGAGGGTTATGATACAATAGTAGGGGAAAGAGGGATTCAGCTATCTGGAGGGCAGAAACAACGGGTGGCAATTGCACGAGCAATAGTAAAGAATCCAAAAATATTACTACTGGATGAGGCGACTAGTGCACTTGATGCAGAGTCTGAAAAAGTGGTTCAGGATGCACTAGAGCGTGTTATGGTGAATCGAACCACAGTGGTAGTGGCTCATAGGCTATCCACTATAAAGGGTGCAGATTTAATTGCAGTAGTAAAAAATGGTGTGATAGCAGAGAAGGGAAAACACGAAGCATTACTGAGCAAGGAAGGTGATTATGCTTCCTTGGTTGCATTGCATACAAGTGCTTCTACATCCTAG 1275 0.4322 MCFEKVVHMEVSWFDEAEHSSGAIGARLSSDAAAVRALVGDALGLLVQNVATVVGCLVIAFEASWQLALIVLALAPLLGLNGYKLYEEASQVASDAVGSIRTVASFCAEKKVMELYQKKCEKPIKTGIRRGIISGIGYGISLFMLYTVYACSFYAGARLVLFALSMAAMGISQSGSLVLDSAKSKSAAASIFAILDRKSQIDPSDDSGLTLEEVQGEIEFKNVSFKYPTRPDWQDSGHISLDGKEIKSMQIKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEVIAAAELANAHNFTSSLQEGYDTIVGERGIQLSGGQKQRVAIARAIVKNPKILLLDEATSALDAESEKVVQDALERVMVNRTTVVVAHRLSTIKGADLIAVVKNGVIAEKGKHEALLSKEGDYASLVALHTSASTS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01617 424 CDD ABC_6TM_Pgp_ABCB1_D2_like 1 201 - -
Vimu7g01617 424 Pfam ABC transporter 234 348 IPR003439 GO:0005524
Vimu7g01617 424 Gene3D - 235 419 IPR027417 -
Vimu7g01617 424 Gene3D - 208 233 IPR027417 -
Vimu7g01617 424 FunFam ABC transporter B family member 9 185 207 - -
Vimu7g01617 424 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 235 414 IPR039421 -
Vimu7g01617 424 FunFam ABC transporter B family member 28 233 420 - -
Vimu7g01617 424 SUPERFAMILY ABC transporter transmembrane region 2 202 IPR036640 GO:0005524|GO:0016020
Vimu7g01617 424 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 177 417 IPR003439 GO:0005524
Vimu7g01617 424 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 161 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01617 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 417 IPR027417 -
Vimu7g01617 424 Gene3D ABC transporter type 1, transmembrane domain 1 160 IPR036640 GO:0005524|GO:0016020
Vimu7g01617 424 Gene3D ABC transporter type 1, transmembrane domain 161 207 IPR036640 GO:0005524|GO:0016020
Vimu7g01617 424 Pfam ABC transporter transmembrane region 3 161 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01617 424 ProSitePatterns ABC transporters family signature. 320 334 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01617 Vimu-Chr7 15125332 15127370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01617 6 423 Calmodulin-binding Proteins AT2G36910 39.300 1.57e-103 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01617 K05658 - gmx:102660078 656.366