Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01616 ATGGTGGCTGAGGCCAGCTTGGATGCACAAAGGACTTCAACTGAGATGACAGGATCAACAAGTGGTGATCCAGCAGTTCAAGGTCCTGAAAATACCCAAGAAACGGATGACAGGCAGCAGGATTCCAACAGGAGCAAGGCGAAGCATGAAAGCAATAAAACAGTACCTTTTTACAAACTTTTCTCCTTTGCAGACTATTGGGATTGTCTTCTGATGCTTGTTGGGGCAATAAGTGCTGTTGCTAATGGAATCGTTATGCCTTTAATGACTATACTTATTGGAGATGCTATTGATGCTTTCGGAGGAAATGCTGATAATAAACAAGAAGTAGTTCATGAAGTATCCAAGGCATCTATGAAGTTTGCAGCCATAGGTGCAGGTGCCTTTTTTGCAGCATTCTTCCAGGTGTCTTGCTGGGTGATCACTGGGGAGAGACAAGCTGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGTTTCTTTGACAAGGAAACCAACAGTGGCGAGGTTGTTGGAAGGATGTCAGGGGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAATTCATCCAACATGTGGCATGTTTTTTTGGAGGTATAGTCATAGCATTCATCAAGGGTTGGCTTCTAAGCCTTGTGCTTCTATCTTCTCTTCCTCTTCTTGTCCTCTCTGGTTCCATAATGAGCTTTGCTTTTGCAAAGATGGCATCCCGAGGACAAGCAGCTTATTCCGAAGCAGCAACTCTAGTGGAGCGGACAATTGGTTCAATTCGAACTGTAGCATCATTTACCGGAGAGAAGCAAGCCATAGCTCAATACAATCAATACTTAACAAAAGCTTACAGAGTGGGAGTGCAAGAGGGTTTGGCTGGTGGTTTTGGCTTTGGTTTTGTTCGTTTATTTATTTACTGTACCTATGGTTTGACAATTTGGTTTGGAGGGAAGATGGTTATAGAGAAAGGTTATACGGGAGGACAAGTCATTAGTGTATTTTTTGCAGTTTTGACGGGCTCTATGTCTCTGGGACAGGCATCTCCAAGCTTAGCTGCATTTGCTGCAGGACAAGCAGCAGCATTTAAAATGTTTGAAACAATAAAGAGGCAACCAGATATTGATGCTTATGACTCTTCTGGTCAACAACTAGATGACATTTCAGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTTCAAGACCCGATGAACAGATATTCAATAGATTTTCAATTTCAATATCAAGTGGCACTACTGCAGCATTGGTAGGGCAAAGTGGCAGTGGGAAATCAACAGTTATCAGTTTAATTGAGAGATTTTATGATCCAAACGCTGGTGAAGTTCTCATTGATGGTATCAACCTCAAAGAATTTCAATTGAAGTGGATCAGACAGAAAATTGGCCTTGTCAGCCAGGAGCCAGTTCTTTTTACTTGCAGCATTAAAGAGAATATTGGCTATGGAAAGGAACGGGCAACAGATGAAGAAATAAGAGCAGCAGCTGCACTTGCAAATGCTTCTAATTTCATAGATAAATTTCCCCATGGATTTGACACAATGGTTGGAGAGCATGGAACTCAACTCTCTGGAGGTCAAAAGCAAAGAATATCTATAGCAAGAGCAATTCTGAAGGACCCAAGAATTCTGCTCCTTGATGAAGCTACAAGTGCTCTAGATGCGGAATCAGAGAGAGTGGTGCAAGAGACACTAGACAGAATTATGATCAACCGAACAACTGTCATTGTAGCCCACCGCCTTAGCACAATAAGGAATGCTGATGTCATTGCCGTTATTCATCAAGGAAAAGTCATAGAAAAAGGTACACATGCAGACCTCACTAAAGATCCTGATGGAGCTTTTAGCCAGCTCGTTAGATTGCAAGAAATTAAAAGGGAGTCAAAACAGCATGATGCAAATTACTTAAGCAGGCCAGAAAACTTGGTAGATTCTAAACGACAACCGAGCCAACGGTATTCTTTCCCTCAATCTTTAAGCCGGGGATCATCTGGATCATCTGGAAGAGGAAGCAGCAGTCAGAACTCATTCAGAATATCAAATGCCATGCCCACCACGCACGATCACTTTGAAACCTCAGAAGGAGGATCTGGAGCTTTTCCTTCAGCAGCATCAGATAAACCTAAGGAAATTTCAATTCTCCGCATTGCTTATCTTAACAAGCCTGAAATCCCATTGTTACTCTTGGGGACTCTAGCAGCAGCAGTAACAGGGGCAATACTACCCACCGTGGGGCTCCTTCTTTCCCACATGATAAATACTTTCTTTGAGCCCGCAGATGAACTCCGGAAAGACTCAAAATTTTGGGCACTAATATTTGTTGCTCTTAGTGCGGGTGCCTTCATATTTCTTCCATTAAGGTCCTACTTTTTTTCTGTAGCTGGTTGTAAGTTAATAAAAAGGATCCGGCTAATGTGTTTTGAGAAGATAATTCACATGGAAATAAGCTGGTTCGATAAAGCCGAAAATTCAAGTGGAGCACTTGGAGCAAGGCTGTCCACTGATGCAGCTTCTATTCGAACTTTGGTTGGGGATGCTCTTGGTTTGCTGGTTCAAGATATTGCTACTGTGGTTACAGCCTTGGCAATTGCCTTTGACGCAAACTGGCAGCTTTCTCTCATAGTTCTTGTTTTGGTACCTCTAATAGTTCTAAATGGACATCTGCAAATGAAGTCCATGCAAGGATTCAGCACAGATGCAAAGAAACAATATGAGGAAGCAAGCCAAGTAGCGAATGACGCAGTAGGGAATATCAGAACGGTTGCCGCTTTCTGTGCTGAAGAGAAGGTGATGAAGTTATACCATACAAAATGTGCAGGACCCATCCAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAACGGGTTTTGGGTTATCACTGTTCTTTCTGTTCTCGGTTTATGCATGCAGTTTTTATGCTGGGGCTAAACTTGTAGAGAAGGGAAAAACATCAATCTCAGACGTTTTCCGTGTATTTTTTTCTCTCTCGATGGCAGCTATAGCAATGTCACAATCTGGCTTCATGACCCCAGCTGCAAGTAAAGCAGAAAGTTCTGCAGCTTCTGTATTCGCTATCCTTGATCAGAAATCAATAATAGATACCAGTGACGCTTCAGGAATGACATTGGAACAAGTGAAGGGAGATATCGAGTTTCACCATGTCACTTTCAAGTATCCAACCAGGCCCCATGTTCCTGTATTCAAAGATCTTTCCTTGACCATTCACGCAGGAGAGACAGTTGCTCTAGTTGGTGAAAGTGGAAGTGGAAAGTCAACTGTGATCTCCTTGTTACAAAGATTTTACGACCCAGATTCAGGTCAGATTACACTGGATGGAACAGAAATCCAAAAGCTAAAACTTAAATGGTTTAGGCAGCAGATGGGTCTGGTAAGCCAGGAGCCTTTGTTGTTTAATGACACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAGTCTGAAATTATAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGTTATGATACATTAGTGGGGGAGAGAGGGATTCAAGTGTCTGGAGGGCAGAAGCAGCGGGTGGCAATTGCAAGAGCTATAGTGAAGAGTCCAAAAATATTACTACTAGATGAAGCCACAAGTGCACTTGATGTTGAGTCTGAAAGAGTGGTTCAGGATGCACTTGATCGAGTGAGGGTGGACAGAACCACAATTGTGGTTGCTCACAGGTTATCCACCATAAAGGATGCAGATTTAATTGCAGTGGTTAAAAATGGAGTCATTGCAGAGAAAGGAAAGCACGACACCTTGCTTAACAAAGGTGGTGCATATGATTCGTTGGTAGCACTGCATATTAGTGCTGCTTCATCATAG 3918 0.4265 MVAEASLDAQRTSTEMTGSTSGDPAVQGPENTQETDDRQQDSNRSKAKHESNKTVPFYKLFSFADYWDCLLMLVGAISAVANGIVMPLMTILIGDAIDAFGGNADNKQEVVHEVSKASMKFAAIGAGAFFAAFFQVSCWVITGERQAARIRGLYLKAILRQDISFFDKETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQHVACFFGGIVIAFIKGWLLSLVLLSSLPLLVLSGSIMSFAFAKMASRGQAAYSEAATLVERTIGSIRTVASFTGEKQAIAQYNQYLTKAYRVGVQEGLAGGFGFGFVRLFIYCTYGLTIWFGGKMVIEKGYTGGQVISVFFAVLTGSMSLGQASPSLAAFAAGQAAAFKMFETIKRQPDIDAYDSSGQQLDDISGDIELREVCFSYPSRPDEQIFNRFSISISSGTTAALVGQSGSGKSTVISLIERFYDPNAGEVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTCSIKENIGYGKERATDEEIRAAAALANASNFIDKFPHGFDTMVGEHGTQLSGGQKQRISIARAILKDPRILLLDEATSALDAESERVVQETLDRIMINRTTVIVAHRLSTIRNADVIAVIHQGKVIEKGTHADLTKDPDGAFSQLVRLQEIKRESKQHDANYLSRPENLVDSKRQPSQRYSFPQSLSRGSSGSSGRGSSSQNSFRISNAMPTTHDHFETSEGGSGAFPSAASDKPKEISILRIAYLNKPEIPLLLLGTLAAAVTGAILPTVGLLLSHMINTFFEPADELRKDSKFWALIFVALSAGAFIFLPLRSYFFSVAGCKLIKRIRLMCFEKIIHMEISWFDKAENSSGALGARLSTDAASIRTLVGDALGLLVQDIATVVTALAIAFDANWQLSLIVLVLVPLIVLNGHLQMKSMQGFSTDAKKQYEEASQVANDAVGNIRTVAAFCAEEKVMKLYHTKCAGPIQTGIRQGLVSGTGFGLSLFFLFSVYACSFYAGAKLVEKGKTSISDVFRVFFSLSMAAIAMSQSGFMTPAASKAESSAASVFAILDQKSIIDTSDASGMTLEQVKGDIEFHHVTFKYPTRPHVPVFKDLSLTIHAGETVALVGESGSGKSTVISLLQRFYDPDSGQITLDGTEIQKLKLKWFRQQMGLVSQEPLLFNDTIRANIAYGKGGDATESEIIAAAELANAHKFISSLQQGYDTLVGERGIQVSGGQKQRVAIARAIVKSPKILLLDEATSALDVESERVVQDALDRVRVDRTTIVVAHRLSTIKDADLIAVVKNGVIAEKGKHDTLLNKGGAYDSLVALHISAASS 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01616 1305 MobiDBLite consensus disorder prediction 653 692 - -
Vimu7g01616 1305 MobiDBLite consensus disorder prediction 1 49 - -
Vimu7g01616 1305 Pfam ABC transporter transmembrane region 73 347 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01616 1305 Pfam ABC transporter transmembrane region 739 1009 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01616 1305 MobiDBLite consensus disorder prediction 698 717 - -
Vimu7g01616 1305 SUPERFAMILY ABC transporter transmembrane region 727 1041 IPR036640 GO:0005524|GO:0016020
Vimu7g01616 1305 MobiDBLite consensus disorder prediction 642 692 - -
Vimu7g01616 1305 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 740 1026 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01616 1305 FunFam ABC transporter B family member 1 1051 1300 - -
Vimu7g01616 1305 FunFam ABC transporter B family member 9 59 392 - -
Vimu7g01616 1305 CDD ABC_6TM_Pgp_ABCB1_D2_like 729 1044 - -
Vimu7g01616 1305 SMART AAA_5 1088 1281 IPR003593 GO:0016887
Vimu7g01616 1305 SMART AAA_5 423 595 IPR003593 GO:0016887
Vimu7g01616 1305 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 73 361 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01616 1305 PANTHER ABC TRANSPORTER B FAMILY 32 638 IPR039421 -
Vimu7g01616 1305 FunFam ABC transporter B family member 1 719 1027 - -
Vimu7g01616 1305 MobiDBLite consensus disorder prediction 7 33 - -
Vimu7g01616 1305 ProSitePatterns ABC transporters family signature. 1201 1215 IPR017871 GO:0005524|GO:0016887
Vimu7g01616 1305 MobiDBLite consensus disorder prediction 34 49 - -
Vimu7g01616 1305 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 396 632 IPR003439 GO:0005524
Vimu7g01616 1305 Gene3D ABC transporter type 1, transmembrane domain 956 1050 IPR036640 GO:0005524|GO:0016020
Vimu7g01616 1305 CDD ABC_6TM_Pgp_ABCB1_D1_like 72 356 - -
Vimu7g01616 1305 CDD ABC_MTABC3_MDL1_MDL2 396 634 - -
Vimu7g01616 1305 ProSitePatterns ABC transporters family signature. 535 549 IPR017871 GO:0005524|GO:0016887
Vimu7g01616 1305 CDD ABC_MTABC3_MDL1_MDL2 1061 1296 - -
Vimu7g01616 1305 Gene3D ABC transporter type 1, transmembrane domain 691 877 IPR036640 GO:0005524|GO:0016020
Vimu7g01616 1305 FunFam ABC transporter B family member 1 386 635 - -
Vimu7g01616 1305 SUPERFAMILY ABC transporter transmembrane region 59 380 IPR036640 GO:0005524|GO:0016020
Vimu7g01616 1305 Pfam ABC transporter 1080 1229 IPR003439 GO:0005524
Vimu7g01616 1305 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1061 1298 IPR003439 GO:0005524
Vimu7g01616 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1051 1298 IPR027417 -
Vimu7g01616 1305 Gene3D - 386 635 IPR027417 -
Vimu7g01616 1305 Gene3D - 1051 1299 IPR027417 -
Vimu7g01616 1305 Gene3D ABC transporter type 1, transmembrane domain 59 647 IPR036640 GO:0005524|GO:0016020
Vimu7g01616 1305 Pfam ABC transporter 415 563 IPR003439 GO:0005524
Vimu7g01616 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 634 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01616 Vimu-Chr7 15113315 15118931 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01616 53 1299 Calmodulin-binding Proteins AT2G36910 43.516 0.0 1030
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01616 K05658 - gmx:100777713 2117.43