Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01615 ATGACTTCAACTGAGATGATAGCAACAAGTGATCAAACACAAGTTCAAGGGTCCAAAAGTACAACAGAAAAGATGGTTGGCATGATGCAGGATTCCAAGGAAAACAAGATGAAGAATGAAATCAACAAAACAGTACCCTTTTACAAACTTTTCTCATTTGCAGACTCTCAGGACTGTCTTCTGATGCTTGTTGGGGCAATAAGTGCTGTTGCTAATGGAATCTGTACTCCTTCACTGGCTATATTTGTTGGAGATGCGATTGATGCCTTGGGAGGACATTTTGATCATAAACAAGTACTTCATGAAGTTTCTAAGGTGTCTCTGAAGATTGCATCCATAGGCGCAGGTGCCTTTCTAGCAGCATTCTTGCAGGTGTCTTGCTGGGTGATCACTGGGGAGAGACAAGCTGCAAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGTTTCTTTGACAAGGAAACCAACAGTGGCGAGGTTGTTGGAAGGATGTCAGGGGACACAGTTCTTATTCAAGAAGCCATGGGAGAGAAGGTAGGAAAGTTCATACAGAGTGTGTCAAGTTTTCTAGGAGCCCTAACCTTAGCCTTCACCAAGGGTTGGCTTCTGAGCCTTGTCCTTCTTTCTTCTGCTCCTCTTCTTGTCCTCTCCGGTTCCATGATGAGCTTAGCTTTTTCAAAGATGGCATCTCGAGGACAAGCAGCTTATTCTGAGGCAGCAACTATAGTGGAGCAGACAATTGGTTCAATTCGAACTGTTGCGTCATTTACAGGTGAGAAGCAAGCTATAGCTCAATACAATCGATACTTAACTAAAGCTTACAGGATTTCAGTGCAAGAGGGCGTGGTTAGTGGTTTTGGCGTGGGTTCATTTCAACTATTTTCGATCTGCACTTATGGTTTGGCAATATGGTTTGGAGGGAAGATGGTATTAGAGAAAGGTTACTCAGGAGGACAAGTTATTGCTGTGTTTTGGGCAATAACGACTGGTTGTTTGCGTCTGGGGCAGGCATCTCCAAGCTTAACAGCATTTTCTGCAGGAAAAGCTGCTGCCTTTAAAATGTTTGAAACAATAAAGAGGCAGCCAGATATTGATGCTTATGACTCTTCTGGTCAACAACTAGATGACATTTCAGGAGATATAGAACTTAGGGAGGTTTGCTTTAGTTATCCTTCAAGACCTGATGAACACATATTCAATAGATTTTCAATTTCAATATCAAGTGGCACTACTGCAGCATTGGTAGGGCAAAGTGGCAGTGGGAAATCAACAGTTATTAGTTTGATTGAAAGATTTTATGATCCGCAAGCCGGTGAAGTTCTCATTGACGGCATCAACCTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTCCTTTTTACTGGTAGCATTAAAGAAAATATTGCCTATGGTAAGGATGGGGCAACAGATGAAGAAATCAGAGCTGCAGCTGAGCTTGCTAATGCTATTAAGTTCATTGATGAATTTCCACATGGGCTTGACACAATGGTCGGCGAGCGTGGAACTCAGCTCTCTGGTGGTCAAAAACAAAGAATATCTATAGCAAGAGCAATTCTGAAAGACCCAAGAATTCTTCTCCTTGATGAAGCCACAAGTGCTCTTGATTTAGAATCAGAGAGAGTGGTGCAAGAGACACTAGACAGAATTATGATCAACCGAACAACTGTCATTGTAGCCCATCGCTTAAGCACGATCAGGAATTCTGATATCATTGCAGTTATTCATAAAGGAAAACTACAAGAAAAAGGTTCATATGCTGAACTTACTAATGATCCTGATGGAGCTTTTAGCCAGCTCATTAGATTGCAAGAAATTAGAAGGGAGTCAGAACAGCATGAAGCAAACGACTCAGGCCGGCCAGAAAACTTAATAGATTCTGAACAACAATTGAGCCAACAATTTTCTTTGCCTCTAACTTTCAGCGGTCAATCATCTGGAAGAGAAAACAGCAGTCAGCACTCATTCAAAACGTCCAATGCCATGCCTATCGCACCAGATCGCTTTCAAACACCAAAAGAATGGCCTGAAGTTCTTCCGTCAGCAACATTACATACTCCTCGAGAAGTTTCGTTTTTCCGCATTGCTTATCTTAACAAACCTGAAATCCTAGTGTTACTCATGGGAACTCTAGCAGCAGCAGCAACTGGCGCAGTACAACCCACTATGGGGCTTTTGCTTTCTAACATGATAAACACTTTCCTTGAGCCTGCAGATGAACTCCGTAAAGACTCAAAGTTTTGGTCATTAATATTTGTTGCCCTTGGTATCGCTGCCTTCATACTTATTCCATTAAGGTCCTACTTCTTTGGCGTAGCTGGTTCTAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATAATTCACATGGAAATGGGCTGGTTTGATAAAGCTGAAAATTCAAGTGGAATTCTTGGAGCAAGGCTGTCCACTGATGCAGCTTCCATTAGAACTTTGGTTGGGGATGCTCTTGGTTTGTTGATTCAAGATATCTCGACAGCATTGATAGCCTTGGTAATTGCCTTTCAGGCAAACTGCCAACTTTCTCTAATCATTCTTGTTTTGGTACCACTAGTGTTACTAAATGGATATTTACAAATGAAGTCAATGCAAGGTTTCAGCACAGATGTAAAGAAACTATATGAGGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATAAGAACAGTTGCCTCTTTCTGTGCTGAAGAGAAGGTGATGGAGTTATACCAGAAAAAATGTTTAGGACCAATCAAGACAAGTATAAAGCTAGGTTTAATCAGCGGAGCAGGCTTTGGTCTATCAATCTTCTTTCTGTACGCTTTTAATGCATGCGGTTTTTATGTTGGAGCAAGACTAATTGAGAATGGCAAAGCATCATTCTCAGATGTTTTCCGTGTATTTTATGTTATAATAATGGCAGCCATAGCAATGTCGCAATCTGGCTTCCTGACCCCAGCTGCCAGTAAAGCAAAATGTTCTGTTGCTTCTATATTTGCTATTCTTGATCGGAAATCAAGAATAGATCCCAGTGATGAATCTAGAATGACATTAGAAGAAGTGAAGGGAGAGATTGAGTTTCACCATGTCACTTTCAAGTATCCAACCAGGCCTAATGCTCTTGTATTCAAAGATCTTTCCTTGACTATTCATGCAGGAGAGACTGTTGCTCTGGTAGGTAAAAGTGGAAGTGGAAAGTCAACAATGCTCTCACTGTTACAGAGATTTTACGACCCAGATTCAGGTCAAATCACACTGGATGGAACAGAAGTCCAAAAGCTACAACTTAAATGGCTTAGACAGCAGATGGGTCTGGTGAGCCAGGAGCCTGTGTTGTTTGATGACACCATTCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTGTAGCTGCAGCAGAACTGGCAAATGCACACAAGTTCATTAGCAGTTTGCAGCAGGGATATGATACATTAGTGGGTGTGAGAGGGATTCAATTATCAGGAGGACAGAAGCAGAGGGTGGCAATTGCAAGATCCATTGTAAAGAGTCCAAAAATATTACTGCTAGACGAAGCCACCAGTGCACTTGATGCTGAGTCTGAAAGAATGGTTCAGGATGCACTTGACAGAGTGAGGCTGGATAGAACCACAGTTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTCAATTGCAGTGGTTGAATATGGAGTCATTGCAGAGAAAGGAAAGCATGAGACTTTACTTAACAAAGGTGGTACATATGCTTCCTTAGTAGCACTGCATATGAGTGCTTCTTCTTCATAA 3876 0.4164 MTSTEMIATSDQTQVQGSKSTTEKMVGMMQDSKENKMKNEINKTVPFYKLFSFADSQDCLLMLVGAISAVANGICTPSLAIFVGDAIDALGGHFDHKQVLHEVSKVSLKIASIGAGAFLAAFLQVSCWVITGERQAARIRGLYLKAILRQDISFFDKETNSGEVVGRMSGDTVLIQEAMGEKVGKFIQSVSSFLGALTLAFTKGWLLSLVLLSSAPLLVLSGSMMSLAFSKMASRGQAAYSEAATIVEQTIGSIRTVASFTGEKQAIAQYNRYLTKAYRISVQEGVVSGFGVGSFQLFSICTYGLAIWFGGKMVLEKGYSGGQVIAVFWAITTGCLRLGQASPSLTAFSAGKAAAFKMFETIKRQPDIDAYDSSGQQLDDISGDIELREVCFSYPSRPDEHIFNRFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTGSIKENIAYGKDGATDEEIRAAAELANAIKFIDEFPHGLDTMVGERGTQLSGGQKQRISIARAILKDPRILLLDEATSALDLESERVVQETLDRIMINRTTVIVAHRLSTIRNSDIIAVIHKGKLQEKGSYAELTNDPDGAFSQLIRLQEIRRESEQHEANDSGRPENLIDSEQQLSQQFSLPLTFSGQSSGRENSSQHSFKTSNAMPIAPDRFQTPKEWPEVLPSATLHTPREVSFFRIAYLNKPEILVLLMGTLAAAATGAVQPTMGLLLSNMINTFLEPADELRKDSKFWSLIFVALGIAAFILIPLRSYFFGVAGSKLIKRIRLMCFEKIIHMEMGWFDKAENSSGILGARLSTDAASIRTLVGDALGLLIQDISTALIALVIAFQANCQLSLIILVLVPLVLLNGYLQMKSMQGFSTDVKKLYEEASQVANDAVGNIRTVASFCAEEKVMELYQKKCLGPIKTSIKLGLISGAGFGLSIFFLYAFNACGFYVGARLIENGKASFSDVFRVFYVIIMAAIAMSQSGFLTPAASKAKCSVASIFAILDRKSRIDPSDESRMTLEEVKGEIEFHHVTFKYPTRPNALVFKDLSLTIHAGETVALVGKSGSGKSTMLSLLQRFYDPDSGQITLDGTEVQKLQLKWLRQQMGLVSQEPVLFDDTIRANIAYGKGGDATEAEIVAAAELANAHKFISSLQQGYDTLVGVRGIQLSGGQKQRVAIARSIVKSPKILLLDEATSALDAESERMVQDALDRVRLDRTTVVVAHRLSTIKDADSIAVVEYGVIAEKGKHETLLNKGGTYASLVALHMSASSS 1291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01615 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 726 1012 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01615 1291 Gene3D ABC transporter type 1, transmembrane domain 109 957 IPR036640 GO:0005524|GO:0016020
Vimu7g01615 1291 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Vimu7g01615 1291 SUPERFAMILY ABC transporter transmembrane region 714 1031 IPR036640 GO:0005524|GO:0016020
Vimu7g01615 1291 CDD ABC_6TM_Pgp_ABCB1_D1_like 62 358 - -
Vimu7g01615 1291 SMART AAA_5 412 584 IPR003593 GO:0016887
Vimu7g01615 1291 SMART AAA_5 1074 1267 IPR003593 GO:0016887
Vimu7g01615 1291 MobiDBLite consensus disorder prediction 661 686 - -
Vimu7g01615 1291 FunFam ABC transporter B family member 1 705 1010 - -
Vimu7g01615 1291 SUPERFAMILY ABC transporter transmembrane region 49 369 IPR036640 GO:0005524|GO:0016020
Vimu7g01615 1291 Gene3D - 1037 1290 IPR027417 -
Vimu7g01615 1291 FunFam ABC transporter B family member 1 1037 1286 - -
Vimu7g01615 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 623 IPR027417 -
Vimu7g01615 1291 Pfam ABC transporter transmembrane region 725 997 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01615 1291 Pfam ABC transporter transmembrane region 63 334 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01615 1291 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524|GO:0016887
Vimu7g01615 1291 CDD ABC_MTABC3_MDL1_MDL2 1047 1282 - -
Vimu7g01615 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1047 1284 IPR003439 GO:0005524
Vimu7g01615 1291 FunFam ABC transporter B family member 1 375 624 - -
Vimu7g01615 1291 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 63 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01615 1291 CDD ABC_6TM_Pgp_ABCB1_D2_like 715 1030 - -
Vimu7g01615 1291 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 621 IPR003439 GO:0005524
Vimu7g01615 1291 Pfam ABC transporter 404 552 IPR003439 GO:0005524
Vimu7g01615 1291 FunFam Uncharacterized protein 1011 1037 - -
Vimu7g01615 1291 ProSitePatterns ABC transporters family signature. 1187 1201 IPR017871 GO:0005524|GO:0016887
Vimu7g01615 1291 Gene3D - 383 636 IPR027417 -
Vimu7g01615 1291 MobiDBLite consensus disorder prediction 1 21 - -
Vimu7g01615 1291 MobiDBLite consensus disorder prediction 661 679 - -
Vimu7g01615 1291 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1036 1284 IPR027417 -
Vimu7g01615 1291 Pfam ABC transporter 1066 1215 IPR003439 GO:0005524
Vimu7g01615 1291 FunFam ABC transporter B family member 9 49 381 - -
Vimu7g01615 1291 PANTHER ABC TRANSPORTER B FAMILY 31 626 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01615 Vimu-Chr7 15106184 15112036 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01615 34 1285 Calmodulin-binding Proteins AT2G36910 42.506 0.0 995
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01615 K05658 - gmx:100777713 1994.93