Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01614 ATGGCAAGGCAGCAAGATTCCAAGAAGAACAAGGTGAAGGATGAAAGCAACAAAGCAGTACCCTATTACAAACTTTTTTCATTTGCAGACTCTTCAGATTATCTACTGATGTTTGTCGGGATAGTAAGCGCTGTTGGAAATGGAATAACTAAGGCTTCAACGAATATAGTTATGGGAGAAGCAATTGATGCTTTTACACAAAATGGTAACACTAAACATGTAGTTCATGAAGTTTCCAAGGTGTCTCTAAAGTTTGCAGTAATAGGTGTAGCTTCCTTTCTAACAGCTTTTCTACAGGTGGCTTGTTGGGTGTCCACCGGGGAGAGGCAGGCAGCGAGAATAAGAGGCTTATACCTCAAAGCAATTTTGAGGCAAGATATCAGCTTCTTCGACAAGGAAACCAACACTGCTGAGGTTGTTGGAAGGATATCAGGTGACACATTTCTTATTCAAGAAGCCATGGGAGACAAGGTATTAATGGGAGGTATAGTCATAGCATTCATCAAGGGTTGGCTTCTAACTCTTGTCCTTCTATCTTGTGTTCCACCTCTTGTTTTCTCCGGTTCCATAATGAGCTTTGCGTTCGCAAAGTTGGCATCCCGCGGGCAAGCAGCTTATTCTGAAGCAGCAACCGTAGTAGATCGCACCATTGGTTCAATTCGAACTACTGCAGCTTATAAAGTTCCTCCAATGCAGGTTGCATCATTTACGGGCGAGAATCAAGCCATAGCTCAATACAGTCAATCCTTAACCGAAGCTTACAGGACAGCAGTGCAAGACGGAATGGCTGCTGGTTTAGGCCTTGGTTCAATCCGTTTATTTATTAACAGCAGCTTTGCATTGGCTGTATGGTTCGGAGGGAAGATGGTACTAGAGAAAGGCTATACAGGAGGTGAAGCTTTTACAAGTTTAACAGCATTCACTGCAGGACAGGCTGCCGCCTTTGAAATATTTGAAACAATAAATAGGCAGCCAAAAATTGATGCTTATGATACTGCAGGTCGACAGGTAGATGATATTTCTGGAGATATAGAACTTAGGGAGGTTTGCCTTTGTTATCCTTCAAGGCCAGATGAATTGATACTCAATGGATGTTCCATTTCAATATCAAGTGGCACTACTGCAGCTTTGGTTGGGAAAAGTGGCAGTGGGAAATCAACAGTTATTAGTCTGATTGAGAGATTTTATGATCCACAAGCCGGAGAAGTTCTCATTGACGGCATCAACCTCAGAGAATTTCAATTGAAATGGATCAGACAGAAAATAGGCCTTGTCAGCCAGGAACCAGTCCTGTTTACTGGTAGCATCAAAGAAAATATTGCTTATGGTAAGGAGGGGGCAACAGATGAAGAAATCAGTGCTGCAATTGAACTTGCTAATGCAGCCAAATTCATAGATAGATTTCCGCATGGGCATGATATGATTGTCGGTGAGCATGGTACACAGCTCTCTGGGGGTCAAAAGCAAAGAATTGCCATAGCACGGGCAATTCTAAAAGATCCAAGAATTCTACTCCTTGATGAAGCTACAAGCGCCCTTGATGCTGAGTCTGAGAGAGTGGTCCAAGAGACACTGGACAAAATTATGATAAACCGAACAACTGTCATTGTAGCACATCGCCTAAACACAATAAGGAATGCCGATACAATTGCTGTTATTCATCAAGGAAGAGTAGTAGAAAATGGTGTCCATGCTGACCTCATTAAAGATCCTGATGGAGCTTACAGCCAACTCATTAGATTGCAAGAAATTAACAGGCAGTCAGATGTTACAGATGACTCGGGAAGGCTAAAAAGCAGCAGTCGTCACTCATGCAGAATATCAAATGATATGCCTACTACACTTAATCTCTTGAAAACATCAGAAGGAGAGCCTGAAGTTCTTACTCCAGAAGTACCGCATTCCTCTCCAAAAGTCTCGTTCCTTCACCTTGCTTATCTAAACAAGCCTGAAATTGCAGTGTTAGTCCTAGGGACTCTAGCAGCCACAGTAACTGGGGCCATACTTCCTCTTGTGGGGTTTCTTACCTCCTGCATGATAAATACTTTCTCTGAGCCAGAAAATGAACTTCGTAAAGACTCAAAGTTTTGGGCTGCAATATTTATAGCCGTTGGAGCCGCTGGCTTCATATTTCATCCACTAAGGTCCTACATTTTTGCTGTAGCTGGTTCGAAGTTGATAAAAAGGATCCGGCTAATGTGTTTTGAGAAAATTATTCACATGGAAGTAGCCTGGTTTGACAAAGCTGAGCATTCAAGTGGAGTACTGGGAGCAAGGCTGTCAATTGATGTGGCTTCTATTCGAACTTTTGTTGGGGATGCACTAGGTTTGATGGTTCAAGATATTGCTACAGTAGTTATAGCCTTGGCAATTGCCTTTGAGGCAAACTGGCAGCTTTCTCTCATCATTCTTGTTTTGCTACCACTGTTATTAGTAAACGGACAAGTGCAAATGGGGTCCATGCAAGGATTTGTCACTGATGCAAAGGTTTGCAAGTAA 2499 0.425 MARQQDSKKNKVKDESNKAVPYYKLFSFADSSDYLLMFVGIVSAVGNGITKASTNIVMGEAIDAFTQNGNTKHVVHEVSKVSLKFAVIGVASFLTAFLQVACWVSTGERQAARIRGLYLKAILRQDISFFDKETNTAEVVGRISGDTFLIQEAMGDKVLMGGIVIAFIKGWLLTLVLLSCVPPLVFSGSIMSFAFAKLASRGQAAYSEAATVVDRTIGSIRTTAAYKVPPMQVASFTGENQAIAQYSQSLTEAYRTAVQDGMAAGLGLGSIRLFINSSFALAVWFGGKMVLEKGYTGGEAFTSLTAFTAGQAAAFEIFETINRQPKIDAYDTAGRQVDDISGDIELREVCLCYPSRPDELILNGCSISISSGTTAALVGKSGSGKSTVISLIERFYDPQAGEVLIDGINLREFQLKWIRQKIGLVSQEPVLFTGSIKENIAYGKEGATDEEISAAIELANAAKFIDRFPHGHDMIVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQETLDKIMINRTTVIVAHRLNTIRNADTIAVIHQGRVVENGVHADLIKDPDGAYSQLIRLQEINRQSDVTDDSGRLKSSSRHSCRISNDMPTTLNLLKTSEGEPEVLTPEVPHSSPKVSFLHLAYLNKPEIAVLVLGTLAATVTGAILPLVGFLTSCMINTFSEPENELRKDSKFWAAIFIAVGAAGFIFHPLRSYIFAVAGSKLIKRIRLMCFEKIIHMEVAWFDKAEHSSGVLGARLSIDVASIRTFVGDALGLMVQDIATVVIALAIAFEANWQLSLIILVLLPLLLVNGQVQMGSMQGFVTDAKVCK 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01614 832 Gene3D - 334 583 IPR027417 -
Vimu7g01614 832 SUPERFAMILY ABC transporter transmembrane region 645 824 IPR036640 GO:0005524|GO:0016020
Vimu7g01614 832 Gene3D ABC transporter type 1, transmembrane domain 24 829 IPR036640 GO:0005524|GO:0016020
Vimu7g01614 832 Pfam ABC transporter 362 511 IPR003439 GO:0005524
Vimu7g01614 832 PANTHER ABC TRANSPORTER B FAMILY 4 585 IPR039421 -
Vimu7g01614 832 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524|GO:0016887
Vimu7g01614 832 Pfam ABC transporter transmembrane region 655 824 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01614 832 Pfam ABC transporter transmembrane region 37 307 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01614 832 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 317 - -
Vimu7g01614 832 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 326 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01614 832 FunFam ABC transporter B family member 1 334 583 - -
Vimu7g01614 832 SUPERFAMILY ABC transporter transmembrane region 24 495 IPR036640 GO:0005524|GO:0016020
Vimu7g01614 832 SMART AAA_5 371 557 IPR003593 GO:0016887
Vimu7g01614 832 CDD ABC_MTABC3_MDL1_MDL2 344 582 - -
Vimu7g01614 832 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 580 IPR003439 GO:0005524
Vimu7g01614 832 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 656 832 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01614 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 582 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01614 Vimu-Chr7 15098762 15102116 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01614 18 827 Calmodulin-binding Proteins AT2G36910 36.787 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01614 K05658 - gmx:100798707 1315.44