Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01609 ATGGATGCGGAGGACTGGGATTTGAGTGCAGAGGACCTTGATTCCCTCGAAAGAGACGCTTTCCAGAAGATTGCTCAACTACGCAACCCTCCTCCTCCTTCTTCTCCACACCAACATCACAATTCTGCAACGGCAACAACGAATCACTTCCCACCAAAACCCCTTCCCAATTCGCTTCCCCAAACTGTTGGTGCTTCGTCTCAAGGAGCAAGAACATTGCCCACGTCATTGAAACCAGGGACAAACAACGACAAACAATCCAAAAATGGACTGATAAAGTTTTCAGTCAAATTTTTTCTTCATTCCAGTGGAAATATTGCAGCAAAGTTTCAATATGACCAGGTAGTAATTGCTGCTTTTCGAAAAATCCCTAAATCTTCTTGGAATGCAAAAGAACGGTTATGGGTATTCCCACTGTCTTCTTTGTCAGAGGCGGAGAAGTTTCTTGGAGATGTATCAAGTTATAATGTTCAGGTTGAAAACTTAGATCCCTTAGTGCAACGTGCCATTGCTGCAGCTTCTGCAGTTCCAGATCTTCAAGATCGTTACTGCAAGATCCCTAGTTATATTGAATCAAAGCTATTGCCATTTCAGCGAGAAGGTGTTAGGTTTATATTGCAGCATGGGGGACGTGTTCTCTTAGCAGATGAAATGGGACTAGGGAAAACTTTGCAAGCGATTGCTGTAGCTTCATGCATTCAGGAGTCATGGCCTGTTCTCATAATTGCACCATCTTCACTGCGTTTGCAATGGGCTTGTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTAATTGTCTTACCTCAAAGTGGTGGATCAAATAGAGGAGGTTTCAACATCGTATCTTCAAGTTCTAAAAACAGCATTCGTTTGAATGGACTATTCAACATCATCTCATATGAGTTGGTGCCAAAGCTGCAGAATTTGCTTACGACATGTGACTTTAAGGTTGTGATTGCTGATGAATCACATTATCTGAAAAATGCTCAAGCAAAGAGGACAACTGCTTCTCTTCCTGTCATAAAGAAAGCTCAATATGCATTATTGCTTAGTGGAACACCTGCTTTATCCAGACCAATTGAACTATTCAAGCAGCTGGAAGCTTTGTATCCTGATGTATATAAGAATGTTCATGAATATGGTAACCGGTACTGCAAGGGTGGATTTTTTGGACTTTATCAAGGTGCAAGTAACCATGAAGAGTTGCACAATTTGATGAAGGCTACAGTGCTGATTCGCAGGCTTAAAAAAGATGTCCTTTCTGAACTTCCTGTAAAGCGCAGGCAACAAGTCTTCCTAGACTTGGCTGACAAGGACATGAAGCAAATTAATGCTTTATTTCAAGAGTTGAAAATGGTAAAAGCCAAAATTAAGGATGCTAAATCACAAGAGGAGGCAGAATCACTCAAGTTTACTCAAAAGAATATAATTAACAAGATATATACTGATTCTGCAGAAGCCAAGATTCCATCTGTTCTTGATTATCTTGGAACTGTCATTGAGGCAGGTTGCAAGTTTCTTATATTTGCACACCATCAGTCAATGCTTGATTCGATACATGAGTTTCTTCGTGTAAGTCCACTTAAATGTTATGCATCTCATCCTGAAATGTTAAAGTCTCATAAAACTGCTCAAAATTTCCAGAAGAAAAAAGTGGGTTGCATCCGGATTGATGGCGGTACACCAGCTGCTTCCAGACAGCAATTGGTCACTGAGTTTCAGGAAAAAGATTCTACAAAAGCAGCAGTGCTATCTATTAAAGCTGGAGGCGTTGGGTTAACTTTAACTGCTGCCAGCACAGTAATCTTTGCAGAATTGTCTTGGACTCCCGGTGACCTAATTCAGGCTGAAGACCGTGTTCATAGAATTGGCCAGGTGTCTTCAGTAAATATATACTACTTGCTGGCAAATGACACGGTTGATGACATCATATGGGACGTAGTGCAAAGCAAACTGGAAAATCTGGGGCAGATGTTAGACGGTCATGAAAAGGCCTTGGAGGTCTCTGCTACTCTGCCAGAGAGTAGCCCTTCAAAGCAAAAAACTCTGGACCAGTTTATTAGAAGACCTGAAAACTCGGATAGCCCTTCAAAGAAAACGCTAGACCAGTTTGTTCGAAGATGTGATAAGATGGATGGGTTGGAACATGAGCCCAAACGTCTCCGAAACTGA 2181 0.4136 MDAEDWDLSAEDLDSLERDAFQKIAQLRNPPPPSSPHQHHNSATATTNHFPPKPLPNSLPQTVGASSQGARTLPTSLKPGTNNDKQSKNGLIKFSVKFFLHSSGNIAAKFQYDQVVIAAFRKIPKSSWNAKERLWVFPLSSLSEAEKFLGDVSSYNVQVENLDPLVQRAIAAASAVPDLQDRYCKIPSYIESKLLPFQREGVRFILQHGGRVLLADEMGLGKTLQAIAVASCIQESWPVLIIAPSSLRLQWACMIQQWLNIPSSDILIVLPQSGGSNRGGFNIVSSSSKNSIRLNGLFNIISYELVPKLQNLLTTCDFKVVIADESHYLKNAQAKRTTASLPVIKKAQYALLLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGFFGLYQGASNHEELHNLMKATVLIRRLKKDVLSELPVKRRQQVFLDLADKDMKQINALFQELKMVKAKIKDAKSQEEAESLKFTQKNIINKIYTDSAEAKIPSVLDYLGTVIEAGCKFLIFAHHQSMLDSIHEFLRVSPLKCYASHPEMLKSHKTAQNFQKKKVGCIRIDGGTPAASRQQLVTEFQEKDSTKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRVHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHEKALEVSATLPESSPSKQKTLDQFIRRPENSDSPSKKTLDQFVRRCDKMDGLEHEPKRLRN 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01609 726 Gene3D - 437 714 IPR027417 -
Vimu7g01609 726 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 670 IPR001650 -
Vimu7g01609 726 Coils Coil 446 466 - -
Vimu7g01609 726 SMART ultradead3 190 383 IPR014001 -
Vimu7g01609 726 Pfam Helicase conserved C-terminal domain 504 627 IPR001650 -
Vimu7g01609 726 SMART helicmild6 544 627 IPR001650 -
Vimu7g01609 726 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 713 - -
Vimu7g01609 726 MobiDBLite consensus disorder prediction 38 52 - -
Vimu7g01609 726 MobiDBLite consensus disorder prediction 59 86 - -
Vimu7g01609 726 MobiDBLite consensus disorder prediction 687 726 - -
Vimu7g01609 726 ProSiteProfiles HARP domain profile. 88 164 IPR010003 -
Vimu7g01609 726 CDD SF2_C_SNF 490 638 - -
Vimu7g01609 726 Pfam SNF2-related domain 212 473 IPR000330 GO:0005524|GO:0140658
Vimu7g01609 726 MobiDBLite consensus disorder prediction 17 86 - -
Vimu7g01609 726 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 375 IPR014001 -
Vimu7g01609 726 CDD DEXHc_HARP_SMARCAL1 194 417 - -
Vimu7g01609 726 Gene3D - 166 423 IPR038718 -
Vimu7g01609 726 MobiDBLite consensus disorder prediction 671 726 - -
Vimu7g01609 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 417 IPR027417 -
Vimu7g01609 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 317 669 IPR027417 -
Vimu7g01609 726 FunFam Chromatin remodeling factor18 167 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01609 Vimu-Chr7 15068283 15078687 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01609 462 647 RAD5 or RAD16-like Gene Family AT1G05120 27.749 2.03e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu7g01609 SNF2_N 1.3e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01609 K14440 - gmx:100778246 1186.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01609 7 15068283 15078687 Vimu7g01609 7 15068283 15078687 ECH