Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01605 ATGCAAATTTTTGTCAAGACTTTGACAGGGAAACAGCTTGAAGACGGAAGGACCCTTGCGGATTATAACATACAGAAGGAATCCACTTTGCACTTGGTTTTGAGGCTTCGTGGTGGCATGCAGATTTTTGTGAAGACTTTAACCGGGAAAAATTATAACATCCAGAAGGAATCCACTCTACACTTGGTGTTGAGGCTTCGTGGTGGAATGCAGATATTTGTGAAGACTCTGACAGGGAAAACCATTACCTTGGAGGTGGAAAGCTCTGATACAATTGATAATGTGAAGACAAAGATTCAGGACAAGGAGGGCATTCCACCGGACCAGCAGAGACTTATCTTTGCCGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGACTACAACATTCAAAAAGAATCCACCCTTCATCTCGTCCTTCGCCTTCGTGGTGGCCTTTAA 441 0.4444 MQIFVKTLTGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKNYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGL 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01605 146 SMART ubq_7 70 141 IPR000626 GO:0005515
Vimu7g01605 146 ProSitePatterns Ubiquitin domain signature. 96 121 IPR019954 -
Vimu7g01605 146 FunFam Polyubiquitin-C 40 68 - -
Vimu7g01605 146 FunFam Polyubiquitin 3 70 145 - -
Vimu7g01605 146 PANTHER UBIQUITIN 9 50 - -
Vimu7g01605 146 Gene3D - 50 69 - -
Vimu7g01605 146 Gene3D - 9 41 - -
Vimu7g01605 146 Gene3D - 70 146 - -
Vimu7g01605 146 ProSiteProfiles Ubiquitin domain profile. 1 39 IPR000626 GO:0005515
Vimu7g01605 146 PRINTS Ubiquitin signature 80 100 IPR019956 -
Vimu7g01605 146 PRINTS Ubiquitin signature 122 143 IPR019956 -
Vimu7g01605 146 PRINTS Ubiquitin signature 101 121 IPR019956 -
Vimu7g01605 146 SUPERFAMILY Ubiquitin-like 52 145 IPR029071 -
Vimu7g01605 146 Pfam Ubiquitin family 72 143 IPR000626 GO:0005515
Vimu7g01605 146 Pfam Ubiquitin family 9 37 IPR000626 GO:0005515
Vimu7g01605 146 ProSiteProfiles Ubiquitin domain profile. 70 145 IPR000626 GO:0005515
Vimu7g01605 146 CDD Ubl_ubiquitin 70 145 - -
Vimu7g01605 146 SUPERFAMILY Ubiquitin-like 8 42 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01605 Vimu-Chr7 15040675 15041364 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01605 8 66 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 59.322 2.06e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01605 - K08770 rsx:RhiXN_05168 253.447