LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu7g01603	ATGGGTAAACGGAAACTCTACGAGGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATCAGAACAGTAGCTTCTTTCTGTGCAGAAGAAAAGATGATGGACTTATACCAGAAGAAATGTTCAGGGACCATCCAGACAGGCAGCTTTTATGCTGCAGCCCGACTTGTCGAGAGCGGCAAAACATCAATCTCAGATGTTTTCCGAGTATTTTTCACTCTCACATTGGCAGCAATAGCAATGACACAATCTGGCTTTATGGCCCCAGGTGCAAGTAAAGCAAAAAGTTCTGTTGCTTCTATATATGCTATTCTTGAGCAGAAATCAAATATAGACCCCAGTGATGAGTCTGGAATGATGTTGCAAGAAGTGAGAGGAGAGATTGAGTTCCATCACGTCACTTTCAAGTATCCAACCAGGCCTGATGTGCTTGTATTAAGAGATCTTTCCTTGACTATTCACGCAGGAGAGACAATTGCTCTAGCTGGAGAAAGTGGAAGTGGAAAGTCAACAGTAATCTCATTATTGCAAAGATTTTATGACCCAGATTCAGGTGGTGATGCAACAGAAGCTGAAATTATAGCAGCAGCAGAACTGGCGAATGCGCACAAATTCATTAGCAGTTTGCAACAGGATTACGATACAGTAGTAGGGGAGAGAGGGATTCAACTATCGGGAGGACAGAAGCAGCGGGTGGCAATTGCAAGAGCCATAGTAAAAAGTCCAAAAATATTACTGCTGGATGAAGCCACTAGTGCATTAGATGCTGAGTCTGAAAGAGTCGTTCAGGATGCACTTGACCGAGTGAGGGTCGACAAAACAACAATTGTGGTGGCTCACAGGTTATCCACCATAAAGGATGCAGATTCAATTGCAGCGGTTGAACATGGAGTCATTGCAGAGCAAGGAAAGCATGACACTTTGATTAACAAGGGTGGTATTTATGCTTCGTTAGTAGGCTTGCACACAGCTCATGCTTCATCTTAG	987	0.4347	MGKRKLYEEASQVANDAVGNIRTVASFCAEEKMMDLYQKKCSGTIQTGSFYAAARLVESGKTSISDVFRVFFTLTLAAIAMTQSGFMAPGASKAKSSVASIYAILEQKSNIDPSDESGMMLQEVRGEIEFHHVTFKYPTRPDVLVLRDLSLTIHAGETIALAGESGSGKSTVISLLQRFYDPDSGGDATEAEIIAAAELANAHKFISSLQQDYDTVVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDKTTIVVAHRLSTIKDADSIAAVEHGVIAEQGKHDTLINKGGIYASLVGLHTAHASS	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu7g01603	328	ProSitePatterns	ABC transporters family signature.	224	238	IPR017871	GO:0005524\|GO:0016887
	Vimu7g01603	328	Gene3D	-	126	185	IPR027417	-
	Vimu7g01603	328	Gene3D	-	188	323	IPR027417	-
	Vimu7g01603	328	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	117	321	IPR027417	-
	Vimu7g01603	328	FunFam	ABC multidrug transporter, putative	194	323	-	-
	Vimu7g01603	328	SMART	AAA_5	155	304	IPR003593	GO:0016887
	Vimu7g01603	328	SUPERFAMILY	ABC transporter transmembrane region	4	112	IPR036640	GO:0005524\|GO:0016020
	Vimu7g01603	328	PANTHER	ABC TRANSPORTER B FAMILY	187	321	IPR039421	-
	Vimu7g01603	328	FunFam	Uncharacterized protein	89	118	-	-
	Vimu7g01603	328	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	128	321	IPR003439	GO:0005524
	Vimu7g01603	328	Pfam	ABC transporter transmembrane region	6	41	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Vimu7g01603	328	Gene3D	ABC transporter type 1, transmembrane domain	49	125	IPR036640	GO:0005524\|GO:0016020
	Vimu7g01603	328	Pfam	ABC transporter	201	252	IPR003439	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu7g01603	Vimu-Chr7	15030887	15032739	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu7g01603	72	324	Calmodulin-binding Proteins	AT2G36910	45.302	6.83e-75	248

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu7g01603	K05658		-	gmx:100798707	502.286