Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01599 ATGGAAGTTGTGGGAATGATGTGGAGGGAAAGGATTTTGTCTCTATGTTTAATTAGTACTAATGTCCATTTTACCATGAAACTCTACGAGGAAGCAAGTCAAGTAGCAAATGATGCAGTAGGGAATATCAGAACAGTAGCTTCTTTCTGTGCAGAAGAAAAGATGATGGACTTATACCAGAAGAAATGTTCAGGGACCATCCAGACAGGTATAAGGCAAGGTTTAGTCAGCGGAACAAGTTTTGGGATATCACTCTTCTTGGTGTTCTCAGTTAATGCAGGCAGCTTTTATGCTGCAGCCCAACTTGTCGAGAGCGGCAAAACATCAATCTCAGATGTTTTCCGAGTATTTTTCACTCTCACATTGGCAGCAATAGCAATGACACAATCTGGCTTTATGGCCCCAGGTGCAAGTAAAGCAAAAAGTTCTGTTGCTTCTATATATGCTATTCTTGAGCAGAAATCAAATATAGACCCCAGTGATGAGTCTGGAATGATGTTGCAAGAAGTGAGAGGAGAGATTGAGTTCCATCACGTCACTTTCAAGTATCCAACCAGGCCTGATGTGCTTGTATTAAGAGATCTTTCCTTGACTATTCACGCAGGAGAGTTCGATTATACTGATGTAAATCAGACAATTGCTCTAGCTGGAGAAAGTGGAAGTGGAAAGTCAACAGTAATATCATTATTGCAAAGATTTTATGACCCAGATTCAGGTCAGATAACACTAGATGGAACGGAAATAAAAAATCTACAACTCAAATGGTTTAGGAAGCAGATGGGCCTGGTAAGCCAGGAACCTATACTGTTTAATGACACCATCCGAGCCAATATTGCATATGGAAAAGGTGGTGATGCAACAGAAGCTGAAATTATAGCAGCAGCAGAACTGGCGAATGCGCACAAATTCATTAGCAGTTTGCAACAGGGTTACGATACAGTAGTAGGGGAGAGAGGGATTCAACTATCGGGAGGACAGAAGCAGCGGGTGGCAATTGCAAGAGCCATAGTAAAAAGTCCAAAAATATTACTGCTAGATGAAGCCACTAGTGCACTAGATGCTGAGTCTGAAAGAGTCGTTCAGGATGCACTTGACCGAGTGAGGGTCGACAAAACAACAATTGTGGTGGCTCACAGATTATCCACCATAAAGGATGCAGATTCAATTGCAGTGGTTGAACATGGAGTCATTGCAGAGCAAGGAAAGCATGACACTTTGATTAACAAGGGTGGTATTTATGCTTCGTTAGTAGGCTTGCACGCAGCTCATGCTTCATCTTAG 1281 0.4208 MEVVGMMWRERILSLCLISTNVHFTMKLYEEASQVANDAVGNIRTVASFCAEEKMMDLYQKKCSGTIQTGIRQGLVSGTSFGISLFLVFSVNAGSFYAAAQLVESGKTSISDVFRVFFTLTLAAIAMTQSGFMAPGASKAKSSVASIYAILEQKSNIDPSDESGMMLQEVRGEIEFHHVTFKYPTRPDVLVLRDLSLTIHAGEFDYTDVNQTIALAGESGSGKSTVISLLQRFYDPDSGQITLDGTEIKNLQLKWFRKQMGLVSQEPILFNDTIRANIAYGKGGDATEAEIIAAAELANAHKFISSLQQGYDTVVGERGIQLSGGQKQRVAIARAIVKSPKILLLDEATSALDAESERVVQDALDRVRVDKTTIVVAHRLSTIKDADSIAVVEHGVIAEQGKHDTLINKGGIYASLVGLHAAHASS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01599 426 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 174 419 IPR003439 GO:0005524
Vimu7g01599 426 SMART AAA_5 209 402 IPR003593 GO:0016887
Vimu7g01599 426 Gene3D - 164 421 IPR027417 -
Vimu7g01599 426 Pfam ABC transporter 210 350 IPR003439 GO:0005524
Vimu7g01599 426 FunFam ABC transporter B family member 1 164 421 - -
Vimu7g01599 426 FunFam Uncharacterized protein 135 164 - -
Vimu7g01599 426 SUPERFAMILY ABC transporter transmembrane region 25 158 IPR036640 GO:0005524|GO:0016020
Vimu7g01599 426 CDD ABC_MTABC3_MDL1_MDL2 174 417 - -
Vimu7g01599 426 Pfam ABC transporter transmembrane region 26 123 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01599 426 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 26 139 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vimu7g01599 426 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 26 416 IPR039421 -
Vimu7g01599 426 ProSitePatterns ABC transporters family signature. 322 336 IPR017871 GO:0005524|GO:0016887
Vimu7g01599 426 Gene3D ABC transporter type 1, transmembrane domain 22 163 IPR036640 GO:0005524|GO:0016020
Vimu7g01599 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 418 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01599 Vimu-Chr7 15005201 15006947 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01599 31 426 Calmodulin-binding Proteins AT2G36910 45.614 9.18e-106 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01599 K05658 - gmx:100798707 650.588