Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01597 CACCATTTTTCTTCTTTTATATACAATCCATCAAAACCACCCATCACCATCTTTACCGGTGACATTTCTTCATTTTTGGCTCCAACTATACGCATGGCATCTGAGACTCAGAGGGCTCCTATGTTGCCGAACTCCTTTTTTAAAGTTATTCTTAGAACGAATCTTCAAACCGTTAAAATACCAAATATGTTTACTGCCAAATATGGAGATGATCTCCCAAATCCTTTCTTCATGAACCTTCCAAATCAAACTCAATGGAAAATGATTTGGGAAAATGAAAACGGTGAGATTTGGCTGAAAGAGGGGTGGAATGAATTTACGGAACATCATTCCTTGGACCACGAAGATCTTGTTTTATTTGAATACGTAGGAACAGATCAGATGAATGTAAATATATATAAGCAAAGTGGAGTAGAAATGGACTATCCACCCGAAGAAGAGAGCTCTGAACAAATAGGAGGAGGTGAGAGGTCTCTTCCAAGAACTTCATCTCTGAACCAGCCAAATGAAACCAGGGCAAGAGAAGTAGCATGCAATTTCATTTCATGCAATCCCTTTTTCACTGTTGTCATCACACCTTCTCATGTCATTGAATATCGGATGAACGCACTAGATCTAGAAGGCATTATTGAAAAGAAGGAGTACGTGGTGCTGCAGCATGGGGAAAGATCGTGGAGAGTAAGGATGTTATTTAATAATGCTCGTTATAGATTCGGTGCTGGTATTCGCCTGTTTCTTACGGAAAATGAATTGAAGGAAGGAGATATTTGTATATTTGAATTGATTAACAAGGATAATTGTATTTTTAAAGTTTATGTTTTTTAG 825 0.377 HHFSSFIYNPSKPPITIFTGDISSFLAPTIRMASETQRAPMLPNSFFKVILRTNLQTVKIPNMFTAKYGDDLPNPFFMNLPNQTQWKMIWENENGEIWLKEGWNEFTEHHSLDHEDLVLFEYVGTDQMNVNIYKQSGVEMDYPPEEESSEQIGGGERSLPRTSSLNQPNETRAREVACNFISCNPFFTVVITPSHVIEYRMNALDLEGIIEKKEYVVLQHGERSWRVRMLFNNARYRFGAGIRLFLTENELKEGDICIFELINKDNCIFKVYVF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01597 274 PANTHER B3 DOMAIN-CONTAINING 45 269 - -
Vimu7g01597 274 Pfam B3 DNA binding domain 189 266 IPR003340 GO:0003677
Vimu7g01597 274 Pfam B3 DNA binding domain 53 134 IPR003340 GO:0003677
Vimu7g01597 274 Gene3D - 165 274 IPR015300 -
Vimu7g01597 274 SMART B3_2 46 136 IPR003340 GO:0003677
Vimu7g01597 274 SMART B3_2 186 272 IPR003340 GO:0003677
Vimu7g01597 274 Gene3D - 41 137 IPR015300 -
Vimu7g01597 274 MobiDBLite consensus disorder prediction 139 168 - -
Vimu7g01597 274 ProSiteProfiles B3 DNA-binding domain profile. 213 274 IPR003340 GO:0003677
Vimu7g01597 274 ProSiteProfiles B3 DNA-binding domain profile. 43 136 IPR003340 GO:0003677
Vimu7g01597 274 CDD B3_DNA 185 274 IPR003340 GO:0003677
Vimu7g01597 274 SUPERFAMILY DNA-binding pseudobarrel domain 183 274 IPR015300 -
Vimu7g01597 274 CDD B3_DNA 45 134 IPR003340 GO:0003677
Vimu7g01597 274 SUPERFAMILY DNA-binding pseudobarrel domain 45 136 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01597 Vimu-Chr7 14988784 14989884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01597 132 274 REM Transcription Factor Family AT1G49480 32.075 1.01e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu7g01597 B3 1.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01597 - - vra:106773422 369.392