Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01595 ATGGAGGACAAAGTTGCATTCAAAAATTTTCTGCAAGATCAGAAAAAGGCATGTGTTAGTAGCACAGATGCACTGAACTGGACTCGGGAACCATCCATTAGAAACACTCTAGGATCTACTCTTCTCGGTTTGAGTCTCAATAACTTGGAGATTCCCCAAAATCTTGAGCAAGATCCTCTGAATCAACTGGGATTGTTGCAAGTTGAGCTGGAGGATGTGAAGAAGGAGAATCAAAATTTAAGGTCAATGCTTCATGAGATCAGTGAACACTACGCTGCTCTTCAGAATCAGTTATTGTTGGTGATGCAGCAAAAGAAACTATCTTCATCACCTCCGAATCATGAGGACATGCAGAAGGATAGCAGGCAAGATAACGTGAAGAAGCCATGGCTGTTCTTACACACTGGTAAGGTACCCTTCAAGCATTTACTTGTGTTGAACAAAGGCAAAAACCTGAAATATATGTATAATTACGATGTTGAAGGTAAAATGAATAACCAAGTAACACCAGAAGAAGCAAAAATCGTAGAAGATCAAGCATTCGAGGCTTCTTGCAAGAAAGCTAGAGTGTCTGTAAGAGCACTGTCATCAGAATCTTTGAAGGGAGATGGGTGTCAATGGAGAAAATATGGACAAAAGATATCAAAGGGTAACCCTTGTCCTCGGGCCTATTATCGTTGCAACATGGGAACATCATGTCCAGTTCGCAAACAGGTTCAGAGGTGTGCTGCAGATGAAAGTGTTGTCATTACAACCTACGAAGGGACTCATAATCATTCACTCCCTCCGCCAGCTAGATCCATGGCTTCCACAACATCAGCAGCACTCACCATGTTCCTTTCTGGCTCCACCACTAGTTCAGCTTCTACCTTCTATCCATCTGCATCATCATGTCCCACTGTAACGCTTGACTTAACCCACCCCACTAAGAACTACCTCAATTTCCCTCTTTCACTCAACGCTTACCCTCACAACTATGAAGGATTACCCTCAGAGAAAGACCTTTCCTTGGTCCATCTTCTTAGTGCTGCCATCACTACGGATCCTTCTCTTAGGGCAGCATTAGAAGCAGCCGTTTCCTCTATGATTGCAGATTCTCAGAACATCAACAACCACGGCCGTTCTTCTTAG 1131 0.4332 MEDKVAFKNFLQDQKKACVSSTDALNWTREPSIRNTLGSTLLGLSLNNLEIPQNLEQDPLNQLGLLQVELEDVKKENQNLRSMLHEISEHYAALQNQLLLVMQQKKLSSSPPNHEDMQKDSRQDNVKKPWLFLHTGKVPFKHLLVLNKGKNLKYMYNYDVEGKMNNQVTPEEAKIVEDQAFEASCKKARVSVRALSSESLKGDGCQWRKYGQKISKGNPCPRAYYRCNMGTSCPVRKQVQRCAADESVVITTYEGTHNHSLPPPARSMASTTSAALTMFLSGSTTSSASTFYPSASSCPTVTLDLTHPTKNYLNFPLSLNAYPHNYEGLPSEKDLSLVHLLSAAITTDPSLRAALEAAVSSMIADSQNINNHGRSS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01595 376 ProSiteProfiles WRKY domain profile. 196 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g01595 376 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 60 370 IPR044810 GO:0003700
Vimu7g01595 376 SUPERFAMILY WRKY DNA-binding domain 197 262 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g01595 376 Coils Coil 63 97 - -
Vimu7g01595 376 Gene3D WRKY domain 185 263 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu7g01595 376 SMART WRKY_cls 201 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu7g01595 376 Pfam WRKY DNA -binding domain 203 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01595 Vimu-Chr7 14978007 14981091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01595 66 306 WRKY Transcription Factor Family AT4G04450 38.762 5.06e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu7g01595 WRKY 2.2e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01595 - - var:108340459 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01595 7 14978007 14981091 Vimu7g03914 7 36665593 36668675 PCT
Vimu10g00542 10 4429587 4434148 Vimu7g01595 7 14978007 14981091 PCT