Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01590 ATGTCGCCCACCTTCAGGGCAAATCAAAACCAAAGAGACTCTGCTCAATGTCTGACTTGGCTTTTCTTTTTGCTTATCACTTTCTCTCTCTTTCTTTTTCTTTCTTTTTGGTTTAAAGTAGCTTCTGTTGTTGATATGGGAACATTAGAGCAAATCGATGCTCCTCATACCCAGTCATCATCATCTTCGTCTTCTTCCATTGATAGCAACAACCACCCTTCTACGACTCCACCACCCTCTTCCTCCCCTTCATCAAGTGTCTGCAGAAACAGAACTGATTTGAGCACTGACCTCAGACTTGGTCTTAGCATATCTCCTTCCTCTCAATCTGAACCACCTTTCAATTCAACACCAAGGGAGGAAAGTTTCAACTGGCCACCAATTAAGTCCATATTGAGGAGCACCCTTGTGGGGAAACAAAGCCATCTGAGCCAAAAACCATCTTTATTTGTGAAAGTCTACATGGAAGGGATCCCCATCGGAAGAAAATTAAATCTGATGGCACATTATAGCTATGACGGACTGGTGAAAACTCTGGGCCATATGTTTAGGACCACCATTCTGTGTCCAAACTCTCAACCACTCAGTTCTGGGAATTTTCACGTGCTAACTTACGAGGATCAAGAAGGCGACTGGATGATGGTTGGAGATGTACCGTGGGAGATGTTCTTAAACAGTGTGAAGAGGTTGAAGATCACGAGAGCTGACAGATGCTAG 717 0.4379 MSPTFRANQNQRDSAQCLTWLFFLLITFSLFLFLSFWFKVASVVDMGTLEQIDAPHTQSSSSSSSSIDSNNHPSTTPPPSSSPSSSVCRNRTDLSTDLRLGLSISPSSQSEPPFNSTPREESFNWPPIKSILRSTLVGKQSHLSQKPSLFVKVYMEGIPIGRKLNLMAHYSYDGLVKTLGHMFRTTILCPNSQPLSSGNFHVLTYEDQEGDWMMVGDVPWEMFLNSVKRLKITRADRC 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01590 238 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 94 236 IPR003311 GO:0005634|GO:0006355
Vimu7g01590 238 ProSiteProfiles PB1 domain profile. 148 237 IPR000270 GO:0005515
Vimu7g01590 238 MobiDBLite consensus disorder prediction 102 122 - -
Vimu7g01590 238 SUPERFAMILY CAD & PB1 domains 141 232 - -
Vimu7g01590 238 MobiDBLite consensus disorder prediction 54 89 - -
Vimu7g01590 238 Gene3D - 142 238 - -
Vimu7g01590 238 Pfam AUX/IAA family 109 234 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01590 Vimu-Chr7 14936138 14937296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01590 151 238 B3 DNA Binding Superfamily AT2G46530 36.364 6.06e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu7g01590 AUX_IAA 1.1e-32 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01590 K14484 - gmx:100818083 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01590 7 14936138 14937296 Vimu7g01590 7 14936138 14937296 ECH