Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01573 ATGTGTGTTTATGAAGGAATTCCCGCAGAAAAGGTGCGTGAAATAATGTTGATTGCTTCTGTCTCTGCTAAGTCTGCTGAAATGAAGAGAGGGGTCCCTTGGACTTCACTCATTTCAGAAGGTCCTTCTTCTCTACATGGAAACTCTACTGATTCTGCAAAGAAGAGTTCCATTCGAAGGCTGCAAGATGAATTTCCTCTAGCACGCAGACAATCACTTCAAAGGTTTCTTGAGAAGCGAAGAAACAGGTTGGCTAACAAAGCACCTTACGCCTCAAATAAAAACATGGCTCACAACATAGAGAACAACTTCTCTGAAATGTCACATTTTGGTTCCTTGAACTATCAGAAGAGGAATTTCAGCTCAGTGTTGTAG 375 0.416 MCVYEGIPAEKVREIMLIASVSAKSAEMKRGVPWTSLISEGPSSLHGNSTDSAKKSSIRRLQDEFPLARRQSLQRFLEKRRNRLANKAPYASNKNMAHNIENNFSEMSHFGSLNYQKRNFSSVL 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01573 124 ProSiteProfiles Tify domain profile. 1 21 IPR010399 -
Vimu7g01573 124 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 1 96 IPR040390 -
Vimu7g01573 124 Pfam Jas motif 66 90 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01573 Vimu-Chr7 14840769 14841519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01573 1 93 Tify Gene Family AT5G20900 40.385 1.82e-13 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vimu7g01573 Jas_motif 1.4e-12 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01573 K13464 - gmx:100306655 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01573 7 14840769 14841519 Vimu10g00535 10 4314763 4318306 PCT