Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01570 ATGATAGCTTATATGGGGCTACCAAGATTTGAGCTCAAGCATTATAATACTTTGTGGGTTTGTGAGTGTGAAATACATGGTGGAGACATGGGTGAATGGTGGCTTGGATGTGCTATGAATGGCACCTCAGACAGACCTCAAAGTGATTATGGAGTTAGTGGAGAGGGTTTAAGAGAAGCAATAAAAAATGGTGATATTGGTGCTGTCAAGAAACTTCTTGATGAGGGTGTGGATGCAAATTACAAGGACAAGCAAGGACTGTCTTTATTACATTTGGCTGCAGTCTTCAATCAAACTGATATAGTTTTCACTCTCATGGATGCGGGGGCAAGCCTGGAGTACAAAAATGCACAAGGCAATTGA 363 0.416 MIAYMGLPRFELKHYNTLWVCECEIHGGDMGEWWLGCAMNGTSDRPQSDYGVSGEGLREAIKNGDIGAVKKLLDEGVDANYKDKQGLSLLHLAAVFNQTDIVFTLMDAGASLEYKNAQGN 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01570 120 ProSiteProfiles Ankyrin repeat profile. 85 117 IPR002110 GO:0005515
Vimu7g01570 120 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 27 42 120 - -
Vimu7g01570 120 Gene3D - 39 120 IPR036770 -
Vimu7g01570 120 ProSiteProfiles Ankyrin repeat region circular profile. 85 116 - -
Vimu7g01570 120 Pfam Ankyrin repeats (3 copies) 59 115 IPR002110 GO:0005515
Vimu7g01570 120 SMART ANK_2a 85 114 IPR002110 GO:0005515
Vimu7g01570 120 SMART ANK_2a 52 81 IPR002110 GO:0005515
Vimu7g01570 120 SUPERFAMILY Ankyrin repeat 57 119 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01570 64 120 MAP Kinase Kinase Kinase AT4G18950 40.351 3.11e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01570 - - gmx:100814367 146.747