Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01569 ATGGGCTTCTACATCGAAGACCCTCTCTCCGGCTTCACAATAGGCCAGGCCATATACGAGGCTGCTCTCATCATTGCACTTCTCAGATGCCTCTTCTGCTTCCTCACCACAAGGGAGAGGGACACCACCCTTTTGCTCACCACCTTCGGAGACATTAAGGATAGGCTCCCACAGACCGAGGACACCTGTGCGGTTTGCCTCAGCCAGCTTGAGGTCGAGGACGAGGTTCGGGAGCTCATGAACTGTTACCACGTCTTCCACAGAGAGTGCATAGACAGATGGCTGGAGCACGAGCACGAGAATCACAACCCCACCTGTCCACTCTGCAGAGCCCCTTTGCTGAGTTCTTGCTGCCACCACTACTCCGCCGCTTGTCAGCCTCCTCCTCAGCCTAGTTGGGCTGTTGAGAGACTTCTCTATCTCTTCGGCGATGATTTGCTACCTTGCTAG 450 0.5511 MGFYIEDPLSGFTIGQAIYEAALIIALLRCLFCFLTTRERDTTLLLTTFGDIKDRLPQTEDTCAVCLSQLEVEDEVRELMNCYHVFHRECIDRWLEHEHENHNPTCPLCRAPLLSSCCHHYSAACQPPPQPSWAVERLLYLFGDDLLPC 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01569 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 114 IPR013083 -
Vimu7g01569 149 PANTHER RING ZINC FINGER PROTEIN-RELATED 58 147 - -
Vimu7g01569 149 SMART ring_2 63 109 IPR001841 -
Vimu7g01569 149 Pfam Ring finger domain 61 110 IPR001841 -
Vimu7g01569 149 SUPERFAMILY RING/U-box 58 115 - -
Vimu7g01569 149 ProSiteProfiles Zinc finger RING-type profile. 63 110 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01569 Vimu-Chr7 14805087 14805599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01569 1 146 C3H Transcription Factor Family AT5G20885 42.778 9.58e-39 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01569 K16281 - gmx:100306203 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01569 7 14805087 14805599 Vimu7g01569 7 14805087 14805599 ECH