Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01562 ATGTATGGTTACCAAGACACTCTCTATGTTCATTCCTTTAGACAGTTCTACAGAGAGTGTGACATTTTTGGGACCATAGATTACATATTTGGGAATGCAGCGGTGGTTTTTCAAGCATGCAACATCGTGTCCAGAATGCCAATGGCAGGCCAATTCACTGTCATTACTGCACAGTCCAGAGATTCCCCTGATGAGGACACTGGCATTTCAATCCAAAACTGCTCCATTCTAGCTACCACAGAGTTGTATTCGGATTCTGGTAGTGTGAAAAGCTACCTAGGAAGACCATGGAGGGTTTATTCTCGTACCGTGTATCTTGAGTCCTACATTGATGCATTTATTGAGGCAGAGGGGTGGAGCCAGTGGTCTAATGATGAAGGCTTGGACACTTTGTATTATGGAGAGTATGCCAACTATGGGCCTGGTTCAGGGACAGATAACAGAGTAGATTGGGCTGGGTACCATTTAATGGATTACGACAGTGCCTACAACTTCTCAGTTTCGGAATTTATCATTGGTGACGCTTGGCTTGGGTCTACATCATTCCCTTATGACAATGGGATTTAA 567 0.4409 MYGYQDTLYVHSFRQFYRECDIFGTIDYIFGNAAVVFQACNIVSRMPMAGQFTVITAQSRDSPDEDTGISIQNCSILATTELYSDSGSVKSYLGRPWRVYSRTVYLESYIDAFIEAEGWSQWSNDEGLDTLYYGEYANYGPGSGTDNRVDWAGYHLMDYDSAYNFSVSEFIIGDAWLGSTSFPYDNGI 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01562 188 ProSitePatterns Pectinesterase signature 2. 22 31 IPR033131 -
Vimu7g01562 188 PANTHER PECTINESTERASE 1 178 - -
Vimu7g01562 188 SUPERFAMILY Pectin lyase-like 2 185 IPR011050 -
Vimu7g01562 188 Pfam Pectinesterase 1 174 IPR000070 GO:0030599|GO:0042545
Vimu7g01562 188 Gene3D - 1 188 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01562 Vimu-Chr7 14732101 14732667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01562 3 188 Carbohydrate Esterase AT2G26440 74.194 3.79e-103 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01562 - K01051 gmx:102666380 360.533