Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01561 ATGTTTTGTCCGAAATTTAGGGTGGGTTACAGAGGCAAAGATGATCCTAGGATTGGAAAAGGATGTTGGATTTGTGTTACTGGTTTTGGGAAGATTCATTCTAGTTTTAGGAATGGAGAAAGAAGAAAGGAGAGAAGGGGATTGAAAATTGGCGTGGAAATGTGGAGAGGAGAAAATGCAGCATCACACGTTATTTGGAAGGTTGAGAGTGAAATGGAAAGAGCTGAAACGTCTCTCGTCCACTCTCGCATGCAGAGAAAAAACATTAAAGTTGGAAGCGATGAAACACAGACAAGGTGTAAAAAGGATGGTTTCAATTTGAAGCTAAGGCAGAGACCTGAAATCCTCTGCCTTAGAGAAACTCTCACAATGGCGTTTCAGGATTTTGACCTCATCTCAGAGCGGCGGAGAAACGAGAAGAAGCAGAAGATGAGGAAGAGAATCATGATCGGCGTGGTTTCTTCCATCGTCCTCGTTGGCATGATCGGTGCAGTTCTCTTCGTCGTGGTTAAGAATGATGACACTGGCCGTGGCAATACCAGTGGCAAGAGCACTAATAAGGCACGTGCCAGCCATTCACCGCCACACGCTCAAGGTGACTCGCCCAAGGAGCAGGTGGCGCACACGGAGAAGATAGTGAAAATGGTGTGCAGCTCCGCCGATTTCAAGGACAAGTGTGAAGAGCCTTTGAGCAAGGCCATGGATAATGACTCCAAACTCTCGGAACCCAAAGACCTTCTCAAGGCCTACGTTAAGCTTGCAGAGGAAGAGGTTTCCAAGGCCTTCAACAAGACCCTGTCCGTGAAGTTCGACACTGAACAAGAAAAAGGAGCGTTCGAGGATTGCAAGAAGCTGTTTGAGGATGCCAAGGATGACATCGCAACCACCATCTCTGAACTATCCAAAAGCGAGCTCAAGAATATCACTGACAAGAGTCCTGATCTGAACTCCTGGCTCAGTGCTGTCATCTCCTTCCAACAGACCTGCATAGATGGCTTCCCTGAGGGAAACATCAAGACTGAACTTGGAAATCTCATGAACGATTCCAAACAATTCATCAGCAACTCCCTTGCCATTGTCTCTCAGCTCGCATCAACTCTTTCTACATTGGAAACAGCAGCCGCCTCATCACACGGTCGATCCTTGCTATCTCAGTTCTCCAACTCCCCAGCTGCTTCTCTCGACCAAACCGATGGCTTTCCCTCTTGGATCCACAACGATGACCGCAGGATCTTGAAGGCCGTCGATAACAAACCTCCACCTAATGTCACCGTGGCAAAAGATGGCAGTGCAAACTTCAAAACCATCTCCGAAGCTTTGAATGCCGTCCCTGCAAAGTTTGATGGACGGTATGTGATTTACGTCAAAGAAGGAATATACGACGAGACAGTGAAGATTACAAAGAAAATGCAAAACATAACCATGTACGGTGATGGATCCCAAAAGACAATAGTCACTGGCAACAAAAACTTCAGGGACGGAGTCAGGACTTTCCTCACTGCAACTTTTGTGGTGGAGGGAGATGGATTCATAGGCATGGCAATGGGATTCAGAAACACGGCAGGACCCGATGGGCAACAAGCAGTGGCGGCAAGAGTGCAGGGAGATCGTGTAGTGTTTGCGAACTGTCGTTTCGAGGGGTACCAAGACACTTTATACACCCAAGCACACAGACAATTCTACAGGAGTTGCATCGTGACGGGAACAATCGACTTCATCTTCGGTGATGCGGCTGTGGTGCTCCAGAACTGCATCCTGATAATTAGGAAGCCAAACGACAAACAGCAGAACATGGTGACAGCTCAAGGGAGAGAGGACAAGCAGCAAGCGACTGGAATTGTGTTACAGAAGTGCACAATCAAAGCCGATGACGCATTGATCCCAGTGAAGGACAAGATCAGAAGCTACCTCGGAAGACCATGGAAGCAGTACTCAAGAACCATTGTGATGGAATCAGAAATAGGTGACGTGATTCACCCAGATGGATGGACAGCTTGGGCAGGTGATTTCGCTCTGAAAACATTGTACTATGCTGAGTATGGGAACACAGGAGCTGGTGCCTCAACCAGCGCCAGGATCAAGTGGCCCGGTTACCAAGTTATCAACAAAGAACAAGCTACACAGTTCACACCTGGTACTTTCTTGAGAGGCACATGGCTTCAGAGCACAGGAGTGCCCTCTACGCAAGGCTTGTACAATTAA 2202 0.4777 MFCPKFRVGYRGKDDPRIGKGCWICVTGFGKIHSSFRNGERRKERRGLKIGVEMWRGENAASHVIWKVESEMERAETSLVHSRMQRKNIKVGSDETQTRCKKDGFNLKLRQRPEILCLRETLTMAFQDFDLISERRRNEKKQKMRKRIMIGVVSSIVLVGMIGAVLFVVVKNDDTGRGNTSGKSTNKARASHSPPHAQGDSPKEQVAHTEKIVKMVCSSADFKDKCEEPLSKAMDNDSKLSEPKDLLKAYVKLAEEEVSKAFNKTLSVKFDTEQEKGAFEDCKKLFEDAKDDIATTISELSKSELKNITDKSPDLNSWLSAVISFQQTCIDGFPEGNIKTELGNLMNDSKQFISNSLAIVSQLASTLSTLETAAASSHGRSLLSQFSNSPAASLDQTDGFPSWIHNDDRRILKAVDNKPPPNVTVAKDGSANFKTISEALNAVPAKFDGRYVIYVKEGIYDETVKITKKMQNITMYGDGSQKTIVTGNKNFRDGVRTFLTATFVVEGDGFIGMAMGFRNTAGPDGQQAVAARVQGDRVVFANCRFEGYQDTLYTQAHRQFYRSCIVTGTIDFIFGDAAVVLQNCILIIRKPNDKQQNMVTAQGREDKQQATGIVLQKCTIKADDALIPVKDKIRSYLGRPWKQYSRTIVMESEIGDVIHPDGWTAWAGDFALKTLYYAEYGNTGAGASTSARIKWPGYQVINKEQATQFTPGTFLRGTWLQSTGVPSTQGLYN 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01561 733 SUPERFAMILY Pectin lyase-like 419 730 IPR011050 -
Vimu7g01561 733 MobiDBLite consensus disorder prediction 176 206 - -
Vimu7g01561 733 SMART PMEI_2 208 359 IPR006501 GO:0004857
Vimu7g01561 733 FunFam Pectinesterase 209 364 - -
Vimu7g01561 733 CDD PMEI-like_3 216 365 - -
Vimu7g01561 733 ProSitePatterns Pectinesterase signature 2. 566 575 IPR033131 -
Vimu7g01561 733 PANTHER PECTINESTERASE 165 721 - -
Vimu7g01561 733 Pfam Pectinesterase 422 717 IPR000070 GO:0030599|GO:0042545
Vimu7g01561 733 Gene3D Invertase/pectin methylesterase inhibitor family protein 209 365 IPR035513 -
Vimu7g01561 733 FunFam Pectinesterase 416 731 - -
Vimu7g01561 733 Gene3D - 417 731 IPR012334 -
Vimu7g01561 733 MobiDBLite consensus disorder prediction 176 192 - -
Vimu7g01561 733 NCBIfam pectinesterase inhibitor domain 206 363 IPR006501 GO:0004857
Vimu7g01561 733 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 211 363 IPR035513 -
Vimu7g01561 733 Pfam Plant invertase/pectin methylesterase inhibitor 212 359 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01561 Vimu-Chr7 14729171 14731859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01561 124 733 Carbohydrate Esterase AT2G26450 48.341 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01561 - - vun:114177564 1067.37