Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01545 ATGATGGGTCACGTTGAAAGTGGCGCTTCATTTTTTGCTGCAGTTACACTCGCACTCCACCTCATAACAGCAACCATCCTTTTCCTTCCCCCCTCTTCTTTAAACAGCGCTGTTAGAATCGTTAGGGTTCGTAGGGACGGCACGGGGGATTTCAGGACGGTGACGGAGGCCGTCAACAGTATTCCTTCAGGGAACAAGCGGCGAGTGGTGGTTTGGATCGGAATTGGCGAGTACCGCGAGAAGATAACAGTCGATAAGTCCAAACCTTTCGTCACGTTTTATGGAGAGAGAAATGAGAGCGACACCCACACCATGCCCATCATAACGTACCACGCCACCGCGTTAAGGTATGGGACAGTCGACAGCGCCACCGTCGCTGTCGACTCCGACTACTTCGTCGCTGTCAATGTCGCTTTTGTGGTGCGTTTTTCTCTCTCTCTCTCTCTCCTTTTGTTATGGGATAATAAATTAAAGGAAACAAATGATTTTACAATTGTCGTATGTTTAAATGTTGAGAGGTACGTATACATGCAGAACTCGTCTCCGAGGCCAGATGAAAAGAGTGTTGGAGCACAGGCACTGGCCATGAGGATATCAGGGGACAAGGCTGCGTTCTACAACTGCAAGTTCATGAGCTTTCAGGACACTTTATGTGATGATAAAGGCAGACATTTTTTCAAGGACTGCTACATCCAAGGCTCCTACGATTTCATCTTTGGAAATGGAAAATCCATCTACTTGGTTCGTATTTGTATGTATCACAAGGGAGGGAAAGCATTGCAGAAGATACTGGATTCAGTTTCCTTCACTGCAACATTACGGGGAGTGGTAACAGGAACACTTACCTCGGACGTGCCTGGAAGAAGAGCCCTAGAGTCGTATTTGCTTACACTTACATGGGCTCCCTCATCAGTGCCCGGGGATGGTTCACCAATCAACTTCCTCAACGGAAATCCAACCAGAGCTGTTTCCTCTGGGCGTGTAAAATTTCGGAAGATACTGTCGTATGAAGAAGCAAAGCCCTTCATGAGCATGGCCTATATTCATGGAGGAAAGTGGGTTGTTCCACCTCCAAAGCTGTGA 1083 0.4755 MMGHVESGASFFAAVTLALHLITATILFLPPSSLNSAVRIVRVRRDGTGDFRTVTEAVNSIPSGNKRRVVVWIGIGEYREKITVDKSKPFVTFYGERNESDTHTMPIITYHATALRYGTVDSATVAVDSDYFVAVNVAFVVRFSLSLSLLLLWDNKLKETNDFTIVVCLNVERYVYMQNSSPRPDEKSVGAQALAMRISGDKAAFYNCKFMSFQDTLCDDKGRHFFKDCYIQGSYDFIFGNGKSIYLVRICMYHKGGKALQKILDSVSFTATLRGVVTGTLTSDVPGRRALESYLLTLTWAPSSVPGDGSPINFLNGNPTRAVSSGRVKFRKILSYEEAKPFMSMAYIHGGKWVVPPPKL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01545 360 SUPERFAMILY Pectin lyase-like 40 354 IPR011050 -
Vimu7g01545 360 Gene3D - 23 251 IPR012334 -
Vimu7g01545 360 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 31 247 - -
Vimu7g01545 360 Pfam Pectinesterase 191 247 IPR000070 GO:0030599|GO:0042545
Vimu7g01545 360 Pfam Pectinesterase 42 140 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01545 Vimu-Chr7 14542625 14543941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01545 33 360 Carbohydrate Esterase AT5G07410 37.464 1.14e-72 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01545 K01051 - gmx:100790786 358.221