Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01531 GAAAGGAAGACGATCAATTCAGAGTTATGGCATGCTTGTGCTGGACCTTTGGTGTCTTTGCCTCCTGTTGGAAGTCTTGTGGTGTACTTCCCCCAAGGACACAGCGAACAAGTTGCAGCTTCCATGCAAAAGGAGACTGAATTCATTCCCAGTTACCCTAACCTTCCCTCCAAGTTGATTTGCATGCTTCACAATGTTGCGTTGCATGCTGATCCTGAAACTGATGAGGTCTATGCACAGATGACTCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAACCGTCAACCTACTGAGTTCTTCTGCAAAACACTTACAGCTAGTGATACCAGCACTCATGGTGGATTTTCTGTGCCACGTAGAGCAGCTGAGAAAATATTCCCGACTTTGGATTATTCAATGCAGCCTCCAGCTCAGGAGCTTGTAGCCAAGGATTTGCATGATAATACATGGCCATTTAGACATATTTATAGAGGACAACCAAAGAGGCATCTATTAACTACTGGTTGGAGTGTATTTGTCAGCACAAAAAGACTGCTTGCAGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGAAGCATCTTCTTTTAGGTATAAGGCGTGCTAACAGACAGCAACCAGCACTCTCTTCGTCAGTAATATCCAGTGACAGCATGCATATTGGCATCCTTGCTGCTGCTGCTCATGCTGCTGCAAACAACAGCCCTTTTACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCACTGGCCAAGTACAACAAAGCCATGTACACTCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAATCTGGAGTACGCAGATATATGGGGACAATAACTGGGATCAGCGACTTGGATCCTGTCCGATGGAAAAACTCACAATGGCGAAACATTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCGAGTAGAGTTTCAATTTGGGAAATTGAACCAGTAGTTACTCCTTTCTATATTTGTCCACCTCCATTTTTTAGGCCCAAGTTCCCCAGGCAACCAGGAATGCCAGATGAGGAGTCGGATATGGAAAATGCTTTCAAGAGAGGTATGCCCTGGCTTGGAGAGGAGTTTGGCATGAAGGATGCCTCAAGTTCAATCTTTCCTGGTTTTAGTTTAGTTCAGTGGATGAGCATGCAACCGAATAATCAGCTCTCAGCGGCTCAATCAGGATGTTTCCCATCCATGTTTCCATCTAATACTCTTCAGGGTAACCTTGGCACCGAAGACCCATCCAAGTTATTGAGCTTTCAACCTCCTGTTCTCTCTTCCCCAACTCTTCAATTAAACAAACCTAATCTGCCAAATCAAATCAACCAGTTGCAACAGTCCCCAGTGTCATGGCCTCAGCAGCAACAGTTGCAACAACAGCAACAACAGCAGCAGCTCCAGCAACAACAACAGCTGCAGCAACAACAGCAGCAGCAACTACAGTCATTGTTGCAAATACCAATGAACCATCTCCAGCAGCAGAGGCAACAGCAGCTGCCTGAGCCACAAAACCTGCCATTGCTTCAGCAAATGCCTCATCAGCCAGGACAGCAGCCCCAGAAACCGCAACAGCCAAGTCAGCATGCTACTCTTATGAATAATGGGGTAGTTTCTTCTAACCAGATTACAGGTCAGTTTGTACAACCACCAATGGCATATGGTCAGCTTCAGCAGCAACAATTACTCTCAGGAGGTATCCAAACCCAGCAAGGTATCCAGTCAGCTAGTAAGAACACGTTCCCATTGACATCCTTACCACATGACTCGCAATTTCAACAACAGTTAGACCAGCAAGCTAACCTCTTACTGAGGCAACAGCAGCAGCAACAACAACAACAGACACAATTGCAACAATCTCCACTGCAGTTGTTGCAACAAAACCTGCCACAGATTGCATCACAACAACAACCGCCTGCTACTCAAATGTTACAGCAAAATCCCTCAGAGCAACAACTCCACCTTCAGTTGCTACAGAAATTGCAGCACCAACAACAGCAACTTCTTTCTACGTCCACCCCACTGTTGCAGTCTCAGCTTCTACCACAACAAAATTCTCACCAACAAAACCAGCAATTACCACTGCCCCCACCACCTATATCACATCATCAGCCTCAACAGCTTGCCAATAATGCATGTTCAACAGAGAAGCTTCTCAACAGCAACAACTTCTCTTCTTCGTCTCTTATGCAATCACAACAGAATCCTATGAGCCAATCCCAGAACACACAGAAATCACTTACCACCACCAGAGCTCCCTCTACACTAACAGATGGAGATGCCCCATCATGCTCAACTTCTCCATCTACTAATAACTGCCAGGTGTCTACTCCAAACCTCCTGAAAAGAAATCAGCAACTACCGGCACCATTAGGGGGAAGTTTGATAGTTGAGCCCACTAGTAATCTGTTACAGGATCTTCACAGTAAGCCTGACATGCAGAACAAACATGAGTTGCTCAATCTAAAAGGACCTGACCAGTTGAAGTATAAAGGGGCAATCACCGATCAGCTGGAAGCTTCTTCTTCTGGAACATCTTACTGCCTTGATCCTGGAAATGTCCAACAGAACTTGCCACTTTCGAACTTCTGCATGGAAGGGGATGCCCAATCACACCCAAGAAACAGTTTACCATTTGACACTAATCTGGATGATCTAACCCCTGATACCATGCTTTTAAGGGGATACGACTCTTCAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCTAGAGACATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGAGTGCCAAACTTGCCTTTCAAGCCCGGTTGCTCAAGTGATGTTGTCATCAACGAAACTGGTGTTCTGAATAATAGTGGCTTGCGGGGCAACCAACCTCCACGAATGCGGACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGCATTGATGTTACCCGTTACAGGGGATATGATGAACTTCGGCATGATTTGGCTAAAATGTTTGGGATTGAAGGGCAGCTAGATCCTCAAAGGACTGACTGGAAATTAGTATATGTGGATCATGAAAATGACATCCTTCTTGTTGGTGATGACCCTTGGGATGAATTCGTAAGCTGTGTGCAGAGCATAAAGATATTGTCACATTCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCAATCCCTAATCAAGCTTGCAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAATATGAAGATAACTCAGCTGCCTCTTTTAATAGGTACAGCAGAATAGCCAGCTAG 3375 0.4492 ERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKETEFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPTLDYSMQPPAQELVAKDLHDNTWPFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIRDEKKHLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNIQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDEESDMENAFKRGMPWLGEEFGMKDASSSIFPGFSLVQWMSMQPNNQLSAAQSGCFPSMFPSNTLQGNLGTEDPSKLLSFQPPVLSSPTLQLNKPNLPNQINQLQQSPVSWPQQQQLQQQQQQQQLQQQQQLQQQQQQQLQSLLQIPMNHLQQQRQQQLPEPQNLPLLQQMPHQPGQQPQKPQQPSQHATLMNNGVVSSNQITGQFVQPPMAYGQLQQQQLLSGGIQTQQGIQSASKNTFPLTSLPHDSQFQQQLDQQANLLLRQQQQQQQQQTQLQQSPLQLLQQNLPQIASQQQPPATQMLQQNPSEQQLHLQLLQKLQHQQQQLLSTSTPLLQSQLLPQQNSHQQNQQLPLPPPPISHHQPQQLANNACSTEKLLNSNNFSSSSLMQSQQNPMSQSQNTQKSLTTTRAPSTLTDGDAPSCSTSPSTNNCQVSTPNLLKRNQQLPAPLGGSLIVEPTSNLLQDLHSKPDMQNKHELLNLKGPDQLKYKGAITDQLEASSSGTSYCLDPGNVQQNLPLSNFCMEGDAQSHPRNSLPFDTNLDDLTPDTMLLRGYDSSKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNLPFKPGCSSDVVINETGVLNNSGLRGNQPPRMRTYTKVQKRGSVGRCIDVTRYRGYDELRHDLAKMFGIEGQLDPQRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSHSEVQQMSLDGDLGGNVPIPNQACSGTDSGNAWRGQYEDNSAASFNRYSRIAS 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01531 1124 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 543 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vimu7g01531 1124 Pfam AUX/IAA family 989 1077 IPR033389 -
Vimu7g01531 1124 Coils Coil 617 637 - -
Vimu7g01531 1124 FunFam Auxin response factor 109 213 - -
Vimu7g01531 1124 Coils Coil 483 511 - -
Vimu7g01531 1124 Pfam Auxin response factor 237 319 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vimu7g01531 1124 FunFam Auxin response factor 274 346 - -
Vimu7g01531 1124 Pfam B3 DNA binding domain 111 212 IPR003340 GO:0003677
Vimu7g01531 1124 MobiDBLite consensus disorder prediction 706 732 - -
Vimu7g01531 1124 MobiDBLite consensus disorder prediction 750 798 - -
Vimu7g01531 1124 ProSiteProfiles PB1 domain profile. 991 1074 IPR000270 GO:0005515
Vimu7g01531 1124 SUPERFAMILY CAD & PB1 domains 1004 1069 - -
Vimu7g01531 1124 MobiDBLite consensus disorder prediction 531 553 - -
Vimu7g01531 1124 Gene3D - 274 345 - -
Vimu7g01531 1124 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677
Vimu7g01531 1124 Gene3D - 108 212 IPR015300 -
Vimu7g01531 1124 FunFam Auxin response factor 986 1079 - -
Vimu7g01531 1124 CDD B3_DNA 110 211 IPR003340 GO:0003677
Vimu7g01531 1124 SUPERFAMILY DNA-binding pseudobarrel domain 101 240 IPR015300 -
Vimu7g01531 1124 SMART B3_2 111 213 IPR003340 GO:0003677
Vimu7g01531 1124 Gene3D - 987 1079 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01531 Vimu-Chr7 14425383 14430407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01531 1 472 B3 DNA Binding Superfamily AT1G19220 82.839 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vimu7g01531 AUX_IAA 4.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01531 K14486 - gmx:100816054 1652.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01531 7 14425383 14430407 Vimu7g01531 7 14425383 14430407 ECH
Vimu7g01531 7 14425383 14430407 Vimu10g00494 10 3830447 3836400 PCT