Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01530 ATGGCAACCTCACAAGTCACTGCATCATTGAGGAATTTGTCTACATTTGAAAGGTTTCAAACCTCAACGCTTCGATTTCCTTCTGTTGGGCACGTGAGAATTGGCACTCTCAGGCAAAACTCGTTTCCCTCCCTCGTTGTCAAAGCTGCCACTGTTGTCGCCCCCAAGCACACTACTGTTAGCCCTCTGGGTGACAGAGTACTGGTAAAAATTAAGGATGCTGAGGAGAAGACTGCAGGTGGGATTTTACTGCCATCAACTGCTCAAAGCAAACCTCAAGGGGGTGAAGTGGTTGCTGTTGGAGAAGGAAAGTCGGTTGGGAAGAACAAAGTGGATATTAGTGTAAAGACTGGTGCACAAGTTATGTATTCAAAGTATGCAGGGACTGAGGTGGAGTTCAATGGTTCTAAGCATCTTATACTTAAGGACGATGACATCATTGGTATCCTCGAAACTGATGAGGTCAAGGATCTTAAACCCTTGAACGATAGAGTCTTGATAAAGGTGTGTTACCCTTTTGAGTTTTTGTTTATTCTGATATTGGATGTTAGGCGAAGAATGGCATCGGATGACTTGTCAATCACATTTATGGTTGCTGATGCTGAAGAAAAAACTGCTGGAGGTTTGTTGCTTACGGAGGCAACCAAGGAGAAGCCATCTATTGGAACGGTGATAGCAGTTGGTCCGGGACCTCTGGACGAGGAAGGTAACAGAAAACCATTGTCCATCATACCTGGGAATACTGTTCTGTACTCCAAATATGCGGGGAGTGACTTCAAGGGCAAAGATGATTCTAACTACATTGCTTTGAGGGCTTCAGAAGTCATGGCTATCTTGTCATAG 843 0.446 MATSQVTASLRNLSTFERFQTSTLRFPSVGHVRIGTLRQNSFPSLVVKAATVVAPKHTTVSPLGDRVLVKIKDAEEKTAGGILLPSTAQSKPQGGEVVAVGEGKSVGKNKVDISVKTGAQVMYSKYAGTEVEFNGSKHLILKDDDIIGILETDEVKDLKPLNDRVLIKVCYPFEFLFILILDVRRRMASDDLSITFMVADAEEKTAGGLLLTEATKEKPSIGTVIAVGPGPLDEEGNRKPLSIIPGNTVLYSKYAGSDFKGKDDSNYIALRASEVMAILS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01530 280 Pfam Chaperonin 10 Kd subunit 200 278 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu7g01530 280 Pfam Chaperonin 10 Kd subunit 60 149 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu7g01530 280 SUPERFAMILY GroES-like 199 279 IPR011032 -
Vimu7g01530 280 SUPERFAMILY GroES-like 58 151 IPR011032 -
Vimu7g01530 280 Hamap Co-chaperonin GroES [groES]. 59 151 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu7g01530 280 FunFam 10 kDa chaperonin 189 280 - -
Vimu7g01530 280 PRINTS 10kDa chaperonin signature 137 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu7g01530 280 PRINTS 10kDa chaperonin signature 60 75 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu7g01530 280 PRINTS 10kDa chaperonin signature 116 128 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu7g01530 280 PRINTS 10kDa chaperonin signature 82 103 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu7g01530 280 SMART Cpn10_2 157 279 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu7g01530 280 SMART Cpn10_2 59 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu7g01530 280 Hamap Co-chaperonin GroES [groES]. 157 280 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu7g01530 280 Gene3D GroES chaperonin 53 154 IPR037124 GO:0006457
Vimu7g01530 280 Gene3D GroES chaperonin 193 280 IPR037124 GO:0006457
Vimu7g01530 280 CDD cpn10 62 150 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu7g01530 280 PANTHER 10 KDA HEAT SHOCK PROTEIN 155 278 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu7g01530 280 FunFam 20 kDa chaperonin, chloroplastic 53 152 - -
Vimu7g01530 280 ProSitePatterns Chaperonins cpn10 signature. 60 84 IPR018369 GO:0005524|GO:0006457
Vimu7g01530 280 CDD cpn10 158 279 IPR020818 GO:0005524|GO:0006457|GO:0044183
Vimu7g01530 280 PIRSF Cpn21 180 280 IPR017416 GO:0006457|GO:0046914|GO:1901671
Vimu7g01530 280 PIRSF Cpn21 1 174 IPR017416 GO:0006457|GO:0046914|GO:1901671
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01530 Vimu-Chr7 14422839 14424653 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01530 1 280 Calmodulin-binding Proteins AT5G20720 66.071 4.27e-125 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01530 K04078 - gmx:100804915 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01530 7 14422839 14424653 Vimu7g01530 7 14422839 14424653 ECH
Vimu7g01530 7 14422839 14424653 Vimu10g00493 10 3826422 3828840 PCT