Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01528 TTCCTTCCATTTTCTTTCAATCCCATTTCTTCTTCCTCTGAAAACCTAACCCTAGAATTTGAGATGCAGCAACAGAGGTTAAGACAGCATGCCATGATGCAACCCTCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTACCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTTTATGTCGGCAACATTCATCCCCAGGTTACAGAACCACTTCTTCAAGAGCTTTTTTCGGCTGCAGGTGCCCTTGAAGGATGCAAGCTTATCAGGAAAGAGAAGTCATCCTATGGTTTTGTGGACTACTTCGATCGCAGTTCTGCTGCATTTGCTATTGTAACTCTCAATGGGAGGAATATTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAGGTCACTTCAATATTTTTGTTGGTGATCTTAGTCCTGAGGTCACAGATGCGACGTTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCGATGTTTTGGTTCTGTGATTCAATTTATCAGGATGCTCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGCAGACAGATACGTTGTAATTGGGCAACAAAAGGGGCTAGTGCAAGTGATGAAAAGCAGAGTTCGGATTCTAAAAGTGTTGTGGAGTTGACTAATGGAACATCAGAAGAAGGCCAGGAAATAACCAATGATGACGCCCCCGAGAAGAATCCTCAATATACCACGGTTTATGTTGGCAATCTTGCTCCGGAGGCAAGGATTATATTTGAGACTTTTTACCTTTTTGTCACTTCTGTTGATCTCCATCACCATTTTCATTCTCTTGGTGCCGGAACTATCGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCTCGAATTCTCTTTGGCAAACCTGTAAAGTGTTCATGGGGTAGCAAACCTACTCCTCCAGGAACTGCCTCTACTCCTCTTCCGCCTCCTACTTCTGCAAATGTGCCTGGTTTTTCTCTTGCTAGTCTTGCAGCATATGAACGCCAAATGGCTTTGAGTAAAATGGGTGGTGCACACGCCCTTCTGCATCAGCAAGGACAGCATGCCCTAAAACAGGTAGCCATGGGAATGGGTGCTCCAGGGGCTGGTTATGATGCAAGGTTTCAGAATGTTGCTACCACCCAGCACCTAATGTACTATCAGTAA 1287 0.4491 FLPFSFNPISSSSENLTLEFEMQQQRLRQHAMMQPSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVTEPLLQELFSAAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSMFWFCDSIYQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQSSDSKSVVELTNGTSEEGQEITNDDAPEKNPQYTTVYVGNLAPEARIIFETFYLFVTSVDLHHHFHSLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPVKCSWGSKPTPPGTASTPLPPPTSANVPGFSLASLAAYERQMALSKMGGAHALLHQQGQHALKQVAMGMGAPGAGYDARFQNVATTQHLMYYQ 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01528 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 141 IPR000504 GO:0003723
Vimu7g01528 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 64 346 - -
Vimu7g01528 428 SMART rrm1_1 153 211 IPR000504 GO:0003723
Vimu7g01528 428 SMART rrm1_1 259 339 IPR000504 GO:0003723
Vimu7g01528 428 SMART rrm1_1 68 137 IPR000504 GO:0003723
Vimu7g01528 428 SUPERFAMILY RNA-binding domain, RBD 66 215 IPR035979 GO:0003676
Vimu7g01528 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 281 336 IPR000504 GO:0003723
Vimu7g01528 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 69 135 IPR000504 GO:0003723
Vimu7g01528 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 343 IPR000504 GO:0003723
Vimu7g01528 428 FunFam Oligouridylate-binding protein 1C 235 347 - -
Vimu7g01528 428 MobiDBLite consensus disorder prediction 219 254 - -
Vimu7g01528 428 SUPERFAMILY RNA-binding domain, RBD 249 348 IPR035979 GO:0003676
Vimu7g01528 428 Gene3D - 237 347 IPR012677 -
Vimu7g01528 428 Gene3D - 15 150 IPR012677 -
Vimu7g01528 428 Gene3D - 151 236 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01528 Vimu-Chr7 14395271 14399513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01528 59 343 Eukaryotic Initiation Factors Gene Family AT1G49760 25.723 4.00e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01528 K13201 - gmx:100813736 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01528 7 14395271 14399513 Vimu7g01528 7 14395271 14399513 ECH