Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01527 ATGTCCACCTCCTCGGAGTATTCAGGATTTTCCGGTAACCGTCCGGCGAAGACCACGCCGGAGAAGTCCACGTTCTCTCAGACTTGCAGTTTATTGAGTCAATACCTCAAGGAAAAAGGTACATTCGGAGACCTTACTCTCGGGATGACACGCACCGTCGAAGCAAACGGTTCTTCTTCTGAAGCATCGTGTCAACCTCCAACGACCATGGAGTTGTTTCCCACCATCTTGACCCAAAGGAACCTTTCTGCTGAGGATTTCTTCTCTCCGGAGCCTGCTTATCCTTACGAATCACAGCTTCCAACTTTTGTGAATATGTCAAGTGGCTTCAAGTCTGTGGAAAAGGAGCCTAAATCTGCTCCGTTGACAATCTTTTATGCTGGACAAGTGATTGTGTTTAATGATTTTCCCCCTGAAAAAATGGAGGAGATAATGGCACTGGCAAGCAAGGGAATGTCCCAAAGCCCAAACTACCAGGCATATGCTCACACTAGAAACCAGCAAGGAAATCATACTTCCTTTGTTGCTAATGTCCCTCAACCATCTCCCATACCAACCGTTCGAGATCTTCCAATTGCGAGGAAAGTTTCACTTCATCGATTCTTCGAGAAGAGAAAACACAGAATTTCTGCCAATGCGCCATATCAAATAAACAATCTCAACCCTGTTTCAAATAAGCATGCCGCAGAATCCATTCCATGGCTTGGATTTGGTGTTCCATCAAAATAA 729 0.4527 MSTSSEYSGFSGNRPAKTTPEKSTFSQTCSLLSQYLKEKGTFGDLTLGMTRTVEANGSSSEASCQPPTTMELFPTILTQRNLSAEDFFSPEPAYPYESQLPTFVNMSSGFKSVEKEPKSAPLTIFYAGQVIVFNDFPPEKMEEIMALASKGMSQSPNYQAYAHTRNQQGNHTSFVANVPQPSPIPTVRDLPIARKVSLHRFFEKRKHRISANAPYQINNLNPVSNKHAAESIPWLGFGVPSK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01527 242 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 226 IPR040390 -
Vimu7g01527 242 Pfam Jas motif 191 216 IPR018467 -
Vimu7g01527 242 Pfam tify domain 116 149 IPR010399 -
Vimu7g01527 242 SMART tify_2 115 150 IPR010399 -
Vimu7g01527 242 MobiDBLite consensus disorder prediction 1 25 - -
Vimu7g01527 242 ProSiteProfiles Tify domain profile. 115 150 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01527 Vimu-Chr7 14388767 14390538 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01527 1 239 Tify Gene Family AT1G19180 42.146 6.81e-52 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vimu7g01527 tify 4.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01527 K13464 - gmx:100527510 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01527 7 14388767 14390538 Vimu7g01527 7 14388767 14390538 ECH
Vimu7g01527 7 14388767 14390538 Vimu10g00488 10 3742808 3744786 PCT