Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01523 ATGGATGGGAGCCGCAAAAGGCAAAGGCCAGAAATGAAGGTGACAGGGTCAAGAGTGGGCGAAATTAATGGGAAAAATTTGAAGGAGAGAGCGAGGTGGCTACCCAAATTCAACAAACAAAACAAAAAAAGGCAAATCCAAAACAATCAGAGAACCTCAATCTTTCCGAGCAGCGGTCCATTTCTCTCCCGGACGCATAAGATTTCCGGCACGGCGATGGCCGCTGTTCGCCTATTCTTCTTCCTCCTCCTCCTCTCCCTCCTCCCTCCCTCCCATCCTCTCTCGGATAACCAAGCTCTCCTCAACCTAAAAAAATCCTTCTCCGACCCCCAAACCCTCCCCTCCTGGGTCCCCGACCAGAACCCTTGCTCCTCTCGTTGGGTCGGCGTCATCTGCGTCAACAACGTCATCAACAGCCTCCATCTCACCGACCTCTCCCTCTCCGGCACCATAGACATCGAAGCCCTCTCCCAGATCCCCTCTCTCCGCTCCATCAGCTTCAACAACAACAACTTCTCCGGCCCCATTCCTGCCTTCAACAAACTCGGAGTCCTCAAAGCCCTCTACTTGACCAACAACAAGTTCTCCGGCCCCATCCCCTCCGACTTCTTCTCCCAGTTAGCCTCCTTGAAGAAAATATGGCTTTCCAACAACAAATTCTCCGGCCCCGTCCCGCAATCTTTAACCACCCTCCGCTACCTCTCCGAGCTCCATCTCGAGAACAACGAGTTCTCCGGCCCCGTCCCCGAACTCAAACAGGACATCAAATCACTCGACTTCTCCAACAACAAGCTCCAAGGCCCAATCCCCTCCTCCATGTCGCGCTTCGACCCCAAATCTTTCTCCGGCAACGTTGAACTCTGCGGGCAGCCGCTGGATAAACCGTGTGAGTCCGCGGCCAGTGAAGGCCCCGGTTGGGGATTGAAGGTGGTTGTTATCATCTTCATTGCCGCTGTTCTCGCCGGCGTTTTCGTCATGGCGCGATCCAAGCGTCAACGCGACGATGACTTCAGCGTGATGAGCAGGGATAACTCGGAGGAGGTAGTGCAGGTGCACGTGCCAAGCACCAACCACAGCAGGGGAAACTCCGATGGAAGCAAAAAGGAGTCGACGACGTCAAAGAAAGGGGCGGGCCGGAGTATTGGTGACCTCGTGATGGTGAACGACGAGAGGGGCACGTTTGGGTTGCCTGATCTGATGAAGGCTGCGGCGGAGGTTCTCGGAAACGGTGGGCTGGGTTCGGCGTACAAAGCCGCCATGGCCAGTGGGTTGTCTGTGGTGGTAAAGCGAATGCGGGAGATGAATAAAGTGAGCAGAGATATCTTCGACGCCGAGATGAGACGTTTTGGAAGACTCGGAAACCCTAACATCTTGACGCCTCTCGCTTACCATTACCGCAAGGAGGAGAAGCTGTTCGTCACAGAGTACATGCCCAAAGGAAGCTTGTTATACGTCTTGCACGGTGATACAGTGATATGTATAATTAAAGGGGATTCGGTAAAATGTTTTTCAGGTGACAGAGGATCGAGTCATTCGGACCTGAACTGGCCAATCCGTTTGAAAATTGTGAAGGGAATAGCACGAGGGTTAGGGTTTCTGTATAAAGAATTTTCCAGCGAAGACCTGCCACATGGAAACCTGAAATCAAGCAATGTTCTGCTAACTGATAATTACGAAGCTCTCCTGGGAGATTTCGCCTTTCATCCTCTAATGAACCACAGCTACGCCGTACAGACAATGTTTGCATACAAAACTCCAGATTACGTAACATACCAGCGTGTGACACAGAAAACGGACGTCTACTGCCTCGGAATCATCGTTCTTGAGGTGATCACCGGGAAATTCCCTTCTCAGTATCACAGCAATGGCAAGGGTGGCACTGACGTGGTGCACTGGGTGCTAACTGCAATCTCTGAAAGAAGAGAGGCGGAGTTGATCGATCCAGAGTTGAAGAGCAGTCACTCTAACTCCCTGAATCAAATGCTACAACTTCTCCAAATAGGGGCTGCTTGCACGGAGAGCAACCCCGAACAACGACTTAACATGAAGGAAGCCATTAGGAGGATAGAGGAGGTTCAGGTTTAA 2085 0.5199 MDGSRKRQRPEMKVTGSRVGEINGKNLKERARWLPKFNKQNKKRQIQNNQRTSIFPSSGPFLSRTHKISGTAMAAVRLFFFLLLLSLLPPSHPLSDNQALLNLKKSFSDPQTLPSWVPDQNPCSSRWVGVICVNNVINSLHLTDLSLSGTIDIEALSQIPSLRSISFNNNNFSGPIPAFNKLGVLKALYLTNNKFSGPIPSDFFSQLASLKKIWLSNNKFSGPVPQSLTTLRYLSELHLENNEFSGPVPELKQDIKSLDFSNNKLQGPIPSSMSRFDPKSFSGNVELCGQPLDKPCESAASEGPGWGLKVVVIIFIAAVLAGVFVMARSKRQRDDDFSVMSRDNSEEVVQVHVPSTNHSRGNSDGSKKESTTSKKGAGRSIGDLVMVNDERGTFGLPDLMKAAAEVLGNGGLGSAYKAAMASGLSVVVKRMREMNKVSRDIFDAEMRRFGRLGNPNILTPLAYHYRKEEKLFVTEYMPKGSLLYVLHGDTVICIIKGDSVKCFSGDRGSSHSDLNWPIRLKIVKGIARGLGFLYKEFSSEDLPHGNLKSSNVLLTDNYEALLGDFAFHPLMNHSYAVQTMFAYKTPDYVTYQRVTQKTDVYCLGIIVLEVITGKFPSQYHSNGKGGTDVVHWVLTAISERREAELIDPELKSSHSNSLNQMLQLLQIGAACTESNPEQRLNMKEAIRRIEEVQV 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01523 694 MobiDBLite consensus disorder prediction 335 381 - -
Vimu7g01523 694 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 81 693 IPR046959 -
Vimu7g01523 694 Pfam Leucine rich repeat 185 243 IPR001611 GO:0005515
Vimu7g01523 694 Gene3D Transferase(Phosphotransferase) domain 1 478 694 - -
Vimu7g01523 694 Pfam Protein kinase domain 405 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01523 694 Gene3D Ribonuclease Inhibitor 254 298 IPR032675 -
Vimu7g01523 694 Gene3D Ribonuclease Inhibitor 94 253 IPR032675 -
Vimu7g01523 694 FunFam Nuclear pore complex protein NUP107 94 250 - -
Vimu7g01523 694 MobiDBLite consensus disorder prediction 343 361 - -
Vimu7g01523 694 MobiDBLite consensus disorder prediction 1 21 - -
Vimu7g01523 694 SUPERFAMILY Protein kinase-like (PK-like) 405 689 IPR011009 -
Vimu7g01523 694 Gene3D Phosphorylase Kinase; domain 1 407 477 - -
Vimu7g01523 694 Pfam Leucine rich repeat N-terminal domain 95 132 IPR013210 -
Vimu7g01523 694 SUPERFAMILY L domain-like 93 276 - -
Vimu7g01523 694 Coils Coil 686 694 - -
Vimu7g01523 694 ProSiteProfiles Protein kinase domain profile. 401 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01523 Vimu-Chr7 14372700 14375009 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01523 74 694 Receptor kinase-like Gene Family AT3G42880 49.155 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu7g01523 Pkinase 6.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01523 - - vum:124828555 1181.39