Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01507 ATGACAATCGGATGGGGTTCGATCTTCTCTAGTTGTTTCAGGAGTGAGTCTGTCTCTCCTTCTCCCAAGCCCACCACCAAAGAGGTGGCTACAAAGGGTGGCTCTTCTTCCAACAGGGTCTCCATCATGGACTTGAGTTTTCCTGGCTCAACGCTTTCGGAGGATCTCTCTTTTTCTTTAGTGGGATCTAACCTCCATGTTTTTTCACTCGCCGAGCTCAAGATCATCACACAGAGTTTCTCTTCGAGTAACTTTTTAGGAGAAGGAGGTTTTGGACCCGTGCACAAGGGCTTCATTGATGACAAGGTTAGGCCTGGTCTCGAGGCTCAACCGGTGGCCGTCAAGCTCTTGGACTTGGACGGTTCTCAGGGCCACAAGGAGTGGTTGACGGAAGTTGTGTTTCTTGGTCAACTAAGGCATCAACATCTGGTGAAGTTGATTGGATATTGCTGTGAAGAAGAACATAGGCTTCTGGTATATGAATATCTACCACGAGGCAGCTTAGAGAATCAACTGTTTAGAAGTAAGATTTCTATGGCAATATATAGATTTACGGCATCGTTACCATGGTCAACAAGAATGAAAATTGCAGCGGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCAAAAAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATTTTGTTAGACTCTGACTATAATGCAAAGCTTTCTGACTTTGGCTTGGCAAAAGATGGTCCCGAAGGAGATGAGACGCACGTTTCAACCAGAGTCATGGGCACACAAGGGTATGCGGCCCCGGAATACATCATGACAGGACACTTGACAGCAATGAGTGATGTATACAGTTTTGGAGTTGTTCTCTTGGAGATTCTAACAGGAAGAAGATCAGTGGACAAAGGTCGCCCCCCAAGAGAACAAAATCTCGTGGAATGGGCCAGACCTGTTCTGAATGATTCCCGGAAACTCGGCCGAATAATGGATCCAAGACTTGAGGGACAGTATTCTGAGGTAGGGGCAAGAAAAGCAGCTGCATTGGCTTACCAATGTCTCAGCCACAGGCCAAGAAGTAGACCCTTGATGAGCACTGTGGTTAGTGTTCTTGAGCCTCTTAAGGACTTCGATGATGTTCCAATTGGACCCTTTGTTTACACTGTTCCACCTGATCATAATGAAATGGCAAAAGAGGTTGAAACACCCAAGGATAGGAAGAGGGAGAATGGTCATCATCATCATCATCATCAAAAGAATGGCCATAGACATCATGATCACGATGAGGCTAATAAAGATGCAAATGGTCACCATCACCACCGAAATCGTCGCCACAATAGGCCTCATCCACTCAAATCACCCAAGACACCAATTTCATCATCAGAGTCACAGAGTAATGAACACCGAAATGCCAGAAGAAGTGGGTCAAATTCACCTGACACCTCAATTGCATCAGAAGCACAAGGAAGCATGGGCTAG 1461 0.4572 MTIGWGSIFSSCFRSESVSPSPKPTTKEVATKGGSSSNRVSIMDLSFPGSTLSEDLSFSLVGSNLHVFSLAELKIITQSFSSSNFLGEGGFGPVHKGFIDDKVRPGLEAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHQHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRSKISMAIYRFTASLPWSTRMKIAAGAAKGLAFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDETHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLEILTGRRSVDKGRPPREQNLVEWARPVLNDSRKLGRIMDPRLEGQYSEVGARKAAALAYQCLSHRPRSRPLMSTVVSVLEPLKDFDDVPIGPFVYTVPPDHNEMAKEVETPKDRKRENGHHHHHHQKNGHRHHDHDEANKDANGHHHHRNRRHNRPHPLKSPKTPISSSESQSNEHRNARRSGSNSPDTSIASEAQGSMG 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01507 486 Gene3D Transferase(Phosphotransferase) domain 1 163 374 - -
Vimu7g01507 486 Pfam Protein tyrosine and serine/threonine kinase 84 364 IPR001245 GO:0004672|GO:0006468
Vimu7g01507 486 FunFam Probable serine/threonine-protein kinase PBL8 163 379 - -
Vimu7g01507 486 MobiDBLite consensus disorder prediction 381 486 - -
Vimu7g01507 486 SUPERFAMILY Protein kinase-like (PK-like) 53 365 IPR011009 -
Vimu7g01507 486 MobiDBLite consensus disorder prediction 431 445 - -
Vimu7g01507 486 MobiDBLite consensus disorder prediction 13 36 - -
Vimu7g01507 486 MobiDBLite consensus disorder prediction 447 486 - -
Vimu7g01507 486 CDD STKc_IRAK 86 368 - -
Vimu7g01507 486 FunFam Serine/threonine-protein kinase BIK1 49 162 - -
Vimu7g01507 486 ProSiteProfiles Protein kinase domain profile. 80 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01507 486 PANTHER OS01G0588500 PROTEIN-RELATED 37 369 - -
Vimu7g01507 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Vimu7g01507 486 MobiDBLite consensus disorder prediction 388 402 - -
Vimu7g01507 486 Gene3D Phosphorylase Kinase; domain 1 49 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01507 Vimu-Chr7 14263375 14265332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01507 66 385 Glycoside Hydrolase AT3G07070 51.713 7.47e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu7g01507 PK_Tyr_Ser-Thr 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01507 - - gmx:100799411 790.03