Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01486 ATGATGAATGGAAGGAACAGGTTCCCCTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCCCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACCCACTTGGACTCTCCTCTCTCCTCAAGGCTCCTCCCTCACCAGTCTCAGCACTTTGGGTGGAACTATTTGCCAATGGGATTGGGGAGGAAAATAGACCCTGAGCCTGGTAGATGCAGGAGAACAGATGGAAAGAAATGGAGGTGCTCAAAGGAGGCTTATCCAGATTCAAAGTACTGCGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTATTGAAAACATCACCAACGACAGCAACAACGATCACAGATGCCTCAACCCCCACAATCTTATCAATCACCAAAAACAGTCCTGCACTCTCTCCAACCACTCATTCTCTCTCTCATGACACTTACCATCACCACCACCCTCAACATTCCCCCCACTCCTTCCTCTATCATCACCCCTCAAGACCCTCTTCCGGTGTTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACACTGACTGCAGGTATGTGTATGGACTGAAAGAAGAGGTGGATGAGCATGCCTTCTTCACCGAACCTTCTGGAACAATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCATTGACCATAAGCTCTTCTTCCTCATCAAAACAGAGGAGTTGCTCTGGTTTGTCCAACGACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAGTGGCAACAACTCAAAACAGTCCCAGCAAGATCAGGGTTGCTACATATCAGGAACCGGCAGTGGTATCAAGTGTGAAACTTTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACTGTTCATCGCTTCTTCGATGAATGGCCCCCCAAGAGCAGAGGATCATGGCTAGATTTGGATGACAAATCATCAACCACCCAGCTCTCAATTTCCATTCCCACTTCTTCCCATGATTTTGCAACTTTCAGTTCAACAACCCAACGAGGTAATGAAACATGA 1125 0.472 MMNGRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTHLDSPLSSRLLPHQSQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTSPTTATTITDASTPTILSITKNSPALSPTTHSLSHDTYHHHHPQHSPHSFLYHHPSRPSSGVALSFQDNSAPLFLDTASCSQNNNTDCRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRSCSGLSNDNNEYSYLQLQSLSGNNSKQSQQDQGCYISGTGSGIKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSSHDFATFSSTTQRGNET 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01486 374 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu7g01486 374 Pfam WRC 78 120 IPR014977 -
Vimu7g01486 374 MobiDBLite consensus disorder prediction 146 178 - -
Vimu7g01486 374 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Vimu7g01486 374 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu7g01486 374 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vimu7g01486 374 PANTHER GROWTH-REGULATING FACTOR 5 8 360 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01486 Vimu-Chr7 14065771 14067824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01486 7 120 GRF Transcription Factor Family AT3G13960 71.930 1.21e-55 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vimu7g01486 WRC 7.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01486 - - gmx:100783524 637.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01486 7 14065771 14067824 Vimu7g01486 7 14065771 14067824 ECH
Vimu7g01486 7 14065771 14067824 Vimu10g00457 10 3434447 3435739 PCT