Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01483 ATGGGAAGAAGCCCTTGTTGTTCAAAGGAGGGTTTGAATAGAGGTGCTTGGACAGGTCATGAAGACAAAATCCTCACAGAATACATTACAGTCCATGGTGAAGGAAGATGGAGAAATCTTCCCAAAAGAGCAGGTTTGAAAAGGTGTGGCAAAAGTTGCAGACTTCGATGGCTCAATTATCTCAGACCTGATATTAAGCGAGGCAATATAACCTCTGATGAAGAAGAACTCATTATCAGACTCCACAACCTCCTCGGAAACAGATGGTCTTTAATAGCAGGGAGGCTTCCAGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAATTTAGGTAAAAAGGTGAAAGAAGGTAACAAAACTTCAACCTTTTGTCGCAGCACACAGAATCCAATGCCCCACTTGCCCAATCCTAAACTAGATTCCCACCTGGTCCGTACAAAAGCCACCAAGTGCACTAAGCTGTTTTTCCCTCACCCATCAATGCTGCAACTTCCCAACAAGTCCCAGGAAGAAGAAAAAGAAAAGGTTCTTGCGGATGCTGTAATGAATGTCCAGATGGAACTCACTACCGGCGATCAAGAAAAACAGCTCTCGGCAGACATGCTCACAGATTTCAACGTCGGTGATATCTGCTTGTCTGATCTTCTTCTCGACTCCGATTTCACCAATATCTGCAACAACCACCAGTTATTCTCTCCTTGTTCGGACCAAACCAGTGCTTCAAACAACCTTCATTCTTTCATTTCGTTCCTCGACACCCATCATAATAATGACTTCTAA 786 0.4338 MGRSPCCSKEGLNRGAWTGHEDKILTEYITVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVKEGNKTSTFCRSTQNPMPHLPNPKLDSHLVRTKATKCTKLFFPHPSMLQLPNKSQEEEKEKVLADAVMNVQMELTTGDQEKQLSADMLTDFNVGDICLSDLLLDSDFTNICNNHQLFSPCSDQTSASNNLHSFISFLDTHHNNDF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01483 261 CDD SANT 16 61 IPR001005 -
Vimu7g01483 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu7g01483 261 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vimu7g01483 261 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu7g01483 261 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 187 - -
Vimu7g01483 261 FunFam Transcription factor TT2 70 137 - -
Vimu7g01483 261 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu7g01483 261 CDD SANT 71 112 IPR001005 -
Vimu7g01483 261 Gene3D - 14 66 - -
Vimu7g01483 261 SMART sant 66 114 IPR001005 -
Vimu7g01483 261 SMART sant 13 63 IPR001005 -
Vimu7g01483 261 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu7g01483 261 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vimu7g01483 261 Gene3D - 70 134 - -
Vimu7g01483 261 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu7g01483 261 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01483 Vimu-Chr7 14045075 14045988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01483 1 116 MYB Transcription Factor Family AT5G49330 74.138 3.91e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu7g01483 Myb_DNA-binding 6.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01483 K09422 - gmx:100802704 355.14