Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01481 ATGGTGAGGGTTAGTGTCTTGAACGATGCTCTCAAGAGCATGTACAATGCTGAGAAAAGGGGGAAGCGCCAAGTCATGATTAGGCCATCCTCCAAGGTCATTATCAAATTTCTTTTGGTGATGCAGAAGCACGGTTACATCGGAGAGTTTGAGTATGTTGATGACCACAGGGCTGGTAAAATCGTGGTTGAATTGAATGGTAGACTGAACAAATGTGGGGTTATTAGCCCCCGTTTTGATGTTGGTGTCAAAGAGATAGAACCTTGGACTGCTAGGCTTCTCCCCTCAAGACAGTTTGGTTACATTGTATTGACTACCTCTGCTGGCATCATGGATCACGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAGAACGCCGTTGTTACATCCTTTTTCTCTGCCTCTAGACAGCTCGGTAAGTTTCAAGCACGCCCCTTCAGATCTTCCATCAAGATGACGTCAGCAAAAACGGTGGAGCACATTGTCCTTTTCAAGGTGAAGGAGGAGACGGAGGCGTCAAAGGTGAGTGAAATGGTGAACGGACTCGGTTCTCTCCTGTCTCTGGACACCGTCCTCCACCTCAGCGTGGGCCCGCTCCTCCGTAACCGATCCTCTTCTTTAACTTTCACTCACATGTTCCATACCCGCTACAAGTCCAAGGAGGATCTCCAAGCCTACTCTGCCCACCCCAGCCACGTCACCGTCGTCAAGGAAAACGTGCTCCCCATCGTCGACGACATCATGACTGTCGATTGGGTCGCCGATGGCCTCAGCAACCTCGTTCCGCCGCCGGGCTCGGCGCTTCGTGTCAGCTTCTTGAAATTGAAGGAGGGCGCAGCTGGAGACGAGGTTTTGGGTGTGGTTAGAGGAATTCCTGAGAATTTCAAGCAGATTAGTGAGTTCAGTTTTGGGGAGAATTTTTCGCCGGTGAGAGCCAAGGGTTTCTCGATTGCTTCGCTCGCGGTTTTCGCGGGACCGACCGAGTTGGAGGCCGTGGATTCGAATCAGGAGTTGGTGAATTACCAGAAGGACAAGGTTAGGGATCAGATCGACAGTGTGGTCGTTGTTGATTACGTGGTTCCGCCACCTCCTCCTGCCCAGAGTACGAACCTTTGA 1116 0.5099 MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLLVMQKHGYIGEFEYVDDHRAGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKNAVVTSFFSASRQLGKFQARPFRSSIKMTSAKTVEHIVLFKVKEETEASKVSEMVNGLGSLLSLDTVLHLSVGPLLRNRSSSLTFTHMFHTRYKSKEDLQAYSAHPSHVTVVKENVLPIVDDIMTVDWVADGLSNLVPPPGSALRVSFLKLKEGAAGDEVLGVVRGIPENFKQISEFSFGENFSPVRAKGFSIASLAVFAGPTELEAVDSNQELVNYQKDKVRDQIDSVVVVDYVVPPPPPAQSTNL 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01481 371 ProSiteProfiles Stress-response A/B barrel domain profile. 267 358 IPR013097 -
Vimu7g01481 371 Gene3D - 1 69 - -
Vimu7g01481 371 ProSitePatterns Ribosomal protein S8 signature. 100 117 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vimu7g01481 371 SUPERFAMILY Dimeric alpha+beta barrel 156 260 IPR011008 -
Vimu7g01481 371 Gene3D - 149 255 - -
Vimu7g01481 371 ProSiteProfiles Stress-response A/B barrel domain profile. 158 252 IPR013097 -
Vimu7g01481 371 Gene3D - 70 132 - -
Vimu7g01481 371 FunFam 40S ribosomal protein S15a 70 132 - -
Vimu7g01481 371 SUPERFAMILY Ribosomal protein S8 4 124 IPR035987 GO:0003735|GO:0005840|GO:0006412
Vimu7g01481 371 PANTHER 40S RIBOSOMAL PROTEIN S15A 1 124 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vimu7g01481 371 SMART Dabb_2 267 360 IPR013097 -
Vimu7g01481 371 SMART Dabb_2 158 254 IPR013097 -
Vimu7g01481 371 SUPERFAMILY Dimeric alpha+beta barrel 268 364 IPR011008 -
Vimu7g01481 371 Pfam Stress responsive A/B Barrel Domain 269 360 IPR013097 -
Vimu7g01481 371 Pfam Stress responsive A/B Barrel Domain 158 253 IPR013097 -
Vimu7g01481 371 Pfam Ribosomal protein S8 7 124 IPR000630 GO:0003735|GO:0005840|GO:0006412
Vimu7g01481 371 FunFam 40S ribosomal protein S15a 1 69 - -
Vimu7g01481 371 Gene3D - 268 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01481 Vimu-Chr7 14026369 14029570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01481 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G59850 93.182 6.61e-86 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01481 - - gmx:100527770 368.622