Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01479 ATGGGCGATTTCCAAGGCCCCTTCATAGTGTCATCACCCCCTCCTTCAGCGTCTTCCTCGGAGAAGTCGAGCACAACGATGTTATACTATGGGCTTGTAGTGGTGGGGGTTGCAGCGGCGGCATTAGCCCTGTACAACTTGATGATGATGAGGAGGAGCAGAAGGAGTCAGATGCAATCAGAAGGCGAAGATGGGTTGGTGGAGGTGGTGAGTGAAAGTAGAATAGAGAACTTGGTGTCATCATCAAGTTTCAAGTACAAAAAAGAAGGAGTTGTGGGTTATGATGATGAATGTTCAGTTTGCTTATCTGGTTTTGAAGAAGGAGAAGAAGTTCGGAAGCTTCTACAGTGCAAGCACTGGTTTCATGCTCCATGCATAGACATGTGGCTCTACTCTCACTTGGACTGCCCAATTTGTCGAACACCTGTGCTTGGTTTCTCGCAGACATTGCTGGAATCAGATGAGCAATTATGA 474 0.4705 MGDFQGPFIVSSPPPSASSSEKSSTTMLYYGLVVVGVAAAALALYNLMMMRRSRRSQMQSEGEDGLVEVVSESRIENLVSSSSFKYKKEGVVGYDDECSVCLSGFEEGEEVRKLLQCKHWFHAPCIDMWLYSHLDCPICRTPVLGFSQTLLESDEQL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01479 157 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 143 IPR044675 -
Vimu7g01479 157 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Vimu7g01479 157 MobiDBLite consensus disorder prediction 1 20 - -
Vimu7g01479 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 145 IPR013083 -
Vimu7g01479 157 SMART ring_2 98 139 IPR001841 -
Vimu7g01479 157 CDD RING-H2_EL5-like 97 140 - -
Vimu7g01479 157 Pfam Ring finger domain 96 140 IPR001841 -
Vimu7g01479 157 SUPERFAMILY RING/U-box 90 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01479 Vimu-Chr7 13999018 13999491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01479 56 148 C3H Transcription Factor Family AT5G17600 46.809 4.98e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01479 - - vun:114177506 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01479 7 13999018 13999491 Vimu7g01479 7 13999018 13999491 ECH
Vimu7g01479 7 13999018 13999491 Vimu10g00447 10 3340500 3341030 PCT