Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01472 ATGAGGAACAGTGAAGGGCGGCTGAGAGGTGAGTGCCGAAGAAGAAGGCCCAAGGCCCAAGGATTGAGGAAGGGTGTGGAATTTGATATTCCTTGCCTTACCTTTAAACCACTCAAACTTGAAACCATTGCTCTGTCATTCAAGATCTGGGAATTTGCCATGTGGAAGGCCCATACTCCTTACCCTTGTGGTGATCCTTATTTTGCCAGTTCAATAGTTGCTTATGGACCACAGGCTATTATGCTGGGATTAGCATCCACCAGAATTGCATTACCTGTTGAGCTTGCAGAAGATGGTCCCATTTATGTCAATGCTAAACAGTATCATGGTATACTCAGAAGGCGACAGTCTCGAGCAAAGCTTGAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTCCATGAATCACGGCACCGTCACGCATTGAAGAGGGTTAGGGGGTCTGGTGGACGCTTTCTCAGCGCCAAGCAGCTGCAGGAGTCTAATGCAGAACATGTTGATGATAATAGCCATTCAGGTCAAAAGAAAGATGCCTCAGAGGTGGAAAGTCATAACTCAAGGACAGCAGAAAATGCATCTATCACATTTACAGCCATCTCTGGCTTAACAACCATGTCTAGTAACAGTCTGAATTTCAGGCAGCCCGAACACAACTTCTTGGGGAACTCCTCTAATATGGGTGGATCATCACAATGCAGTGGTGGACTCACTTTTGGTGGTGGAACTCGGCAATGTGCTTCTGTTGGCCGGTGA 759 0.4651 MRNSEGRLRGECRRRRPKAQGLRKGVEFDIPCLTFKPLKLETIALSFKIWEFAMWKAHTPYPCGDPYFASSIVAYGPQAIMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHRHALKRVRGSGGRFLSAKQLQESNAEHVDDNSHSGQKKDASEVESHNSRTAENASITFTAISGLTTMSSNSLNFRQPEHNFLGNSSNMGGSSQCSGGLTFGGGTRQCASVGR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01472 252 MobiDBLite consensus disorder prediction 163 186 - -
Vimu7g01472 252 MobiDBLite consensus disorder prediction 160 191 - -
Vimu7g01472 252 SMART cbf3 96 157 IPR001289 GO:0003700|GO:0006355
Vimu7g01472 252 ProSiteProfiles NF-YA/HAP2 family profile. 97 157 IPR001289 GO:0003700|GO:0006355
Vimu7g01472 252 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 100 154 IPR001289 GO:0003700|GO:0006355
Vimu7g01472 252 ProSitePatterns NF-YA/HAP2 subunit signature. 102 122 IPR018362 GO:0003677|GO:0016602
Vimu7g01472 252 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 49 193 IPR001289 GO:0003700|GO:0006355
Vimu7g01472 252 Gene3D - 97 159 - -
Vimu7g01472 252 PRINTS CCAAT-binding transcription factor subunit B signature 131 154 IPR001289 GO:0003700|GO:0006355
Vimu7g01472 252 PRINTS CCAAT-binding transcription factor subunit B signature 100 122 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01472 Vimu-Chr7 13952362 13955929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01472 56 163 CCAAT-HAP2 Transcription Factor Family AT1G17590 62.385 1.36e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vimu7g01472 CBFB_NFYA 5.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01472 K08064 - gmx:100792905 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01472 7 13952362 13955929 Vimu7g01472 7 13952362 13955929 ECH