Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01460 ATGAAGAAAGGAAACCTGGGGCTTGGTCTCAAACTCTCCGTTCCTGTTTCTGATCAATCCAATTTTGCCAAGTTCCTGACTGAAAGTGGGACTTTTAAGGATGGTGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAGTGATGTCGAAGCTCCACCTCCAATCAAGCCTACAGACGACCAGCTAACTTTGGCAGATGTAGATGTTATCAAAGTTGTTGGAAAGGGAAATGGAGGGGTAGTCCAATTGGTACAACATAAATGGACGAGTCAGTTTTTTGCATTGAAGGAATTAGGGGAAGGAGATGCTGAATCAGTTGTAACAATATGGGTGACTCTGGGAGGGAGCTGGTCCTCTGTAATTCAAATGAATATTGAGGAGTCTATGAGAAAGCAGATTGCACAAGAGTTGAAAATTAATCAACAGGCACAGTGTCCTTATGTTGTTGTCTGCTATCAATCATTTTATGAAAACGGTGTCATATCAATCATCCTAGAGTACATGGATGGGGGTTCCTTAGCTGATCTACTGAGGAAAGTTAAAACAATTCCAGAGCCTTTTCTTGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAGTTTACCTTCACCATGAAAAGCATATTATCCACAGAGACTTGAAACCTTCTAATTTGTTAATAAATCATATAGGAGAAGTAAAGATTACTGACTTCGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACCTTCATTGGAACTTACAACTATATGTCTCCGGAGAGAATCAATGGAAGCCAGCGAGGCTACAACTACAAAAGTGATATATGGAGTTTGGGACTAATATTGCTAGAGTGTGCTTTGGGGCGGTTTCCATATACACCAGAAGATCAAAGTGAAATTTGGGAAAGCATTTTCGAGCTTATTGAAACCATTGTTGATAAACCTCCTCCTATTCCTCCGTCTGGACAATTTTCTGCAGAATTCTGCTCATTTATCTCAGCATGGTAA 1008 0.4087 MKKGNLGLGLKLSVPVSDQSNFAKFLTESGTFKDGDLLVNRDGVRIVSQSDVEAPPPIKPTDDQLTLADVDVIKVVGKGNGGVVQLVQHKWTSQFFALKELGEGDAESVVTIWVTLGGSWSSVIQMNIEESMRKQIAQELKINQQAQCPYVVVCYQSFYENGVISIILEYMDGGSLADLLRKVKTIPEPFLAAICKQVLKGLVYLHHEKHIIHRDLKPSNLLINHIGEVKITDFGVSAIMESTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYTPEDQSEIWESIFELIETIVDKPPPIPPSGQFSAEFCSFISAW 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01460 335 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vimu7g01460 335 Gene3D Transferase(Phosphotransferase) domain 1 173 335 - -
Vimu7g01460 335 Pfam Protein kinase domain 72 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01460 335 SMART serkin_6 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01460 335 SUPERFAMILY Protein kinase-like (PK-like) 56 332 IPR011009 -
Vimu7g01460 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Vimu7g01460 335 CDD PKc_MAPKK_plant_like 85 334 - -
Vimu7g01460 335 Gene3D Phosphorylase Kinase; domain 1 47 172 - -
Vimu7g01460 335 ProSiteProfiles Protein kinase domain profile. 70 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01460 335 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 17 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01460 Vimu-Chr7 13872911 13876807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01460 1 334 MAP Kinase Kinase Gene Family AT4G29810 62.099 2.43e-155 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vimu7g01460 Pkinase 9.1e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01460 K20603 - gmx:100789734 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01460 7 13872911 13876807 Vimu7g01460 7 13872911 13876807 ECH
Vimu7g01460 7 13872911 13876807 Vimu10g00431 10 3228341 3232299 PCT