Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01459 ATGGAGGAAATATCTTCGAGTGTTGCAGTACCTTTTACACTTGGTGTTGGAAATTTGATTCAAAAAGAGTCTGCAGTAACAACTCACATGGAGATAACTGGGCTGAAGCTTATGGCCAATACAGCAGCGGCTGCTTTGATGTTAAATCCTGCAGTAGAGTGTTGTCAGTCATATTCTGTTGGAAGTGAAAGCCATGCAGATGTAAGTCTGCAGCACCAGATCATGGTATCTGCGGAGGTAAAGGAGAATCAAGTTGGGGATGCCCTTGTCTCAGAAATGGTTATTGAATGTGAGAGTAATTGGGTTTTGAATGAAACTCATCATAAGGCTATAAAGGAAGATGAACTAATGTTAGCTGTGGATTTTCACTGTCTTCATAGTTCAAGCTCTCAGTCTGTGGCTAATGGCCAAAGTGATCCTTGTAGGGAGGAAGCTGTGCCGTTGAAGACTAGTTATTCTGAAATAGAATCTCCAATCATCATGAATGTCGATGATGATGTTCATGGCAAGTCTGGAGTAAACGAACCGTGTCCATCGATGAAGTCAGTGCAGAACACAGTTTCTGTTGCAATGGATATTACTAGTGAGGATCAAAGTGGATCAGATGAGTCTGATCCTAAATCCTCTGCGGTGCTTCTTGACCAGTTGTCTGGGGAGAATAAAGCATGGAGAACGGGCAACAAAAATGCTTTGGAATTGAATAGTGGCCCTCTGTGGGGTTATTCATCAATTTGTGGAATGAGACCGGAGATGGAAGATGTTATTTCTGTTCAGCCTCAACTTTTTCAAGTTCCTTCCCAGATGCTGATGAATGACCACGTAAATGAGAACGAAAAACAGACACTGGCCCACTTTTTCGCCGTCTATGATGGACATGGGGGCCTTCAGGTTGCTAACTACTGCCAGGAACGTCTTCATTCAGTATTGATTGAGGAGATAGAGGCTGCACAATCAAGTTTGGCTGAAACAAATGGGAGAGATGATTGGCAGGACCATTGGAAGAAAGCATTCATCAATTGTTTTCAGAGAGTAGATGATGAGGTTGGAGGAACTGGTGCAAGTAATAATGGAAACAACAGTGGTGGATCTGAGTCTAGTATTGAACCTGTTGCTGCTGAGACTGCTGGTTCCACTGCAGTTGTCGCTATTTTAAGTCAAACCCTCATAATAGTTGCAAATTGTGGAGATTCAAGAACTGTCTTGTACCGTGGAAAAGAGGCCATGCCACTGTCTTCTGACCACAAACCAAATAGAGAGGACGAGCGAGCAAGGATAGAAGCTGCAGGAGGAAGAGTCATACATTGGAAAGGATATCGAGTTCTTGGTGTCTTGGCAATGTCAAGGTCCATAGGTGATAGATACCTTAAGCCATGGATAATTCCAGAACCTGAAGTGAATATTGTGCGTAGAGAGAAAAATGACGAATGTCTTATTCTAGCAAGTGATGGTTTGTGGGATGTAATGACAAATGAAGAAGCCTGCGAGGTTGCTAGGAAGAGAATCCTTCTTTGGCACAAAAAGTTTGGTGAAAACGGAGCAGCAGAACATAGCGAAGGAGCTGATCCTGCTGCTCAATCTGCTGCAGAGTATCTAACAAAGCTTGCCATCCACAGGGGAAGCCAAGATAACATCTCTGTAATTGTCATAGACTTAAAGGCTCAAAGAAGAATTAAGAGAAAGCCTTAA 1686 0.43 MEEISSSVAVPFTLGVGNLIQKESAVTTHMEITGLKLMANTAAAALMLNPAVECCQSYSVGSESHADVSLQHQIMVSAEVKENQVGDALVSEMVIECESNWVLNETHHKAIKEDELMLAVDFHCLHSSSSQSVANGQSDPCREEAVPLKTSYSEIESPIIMNVDDDVHGKSGVNEPCPSMKSVQNTVSVAMDITSEDQSGSDESDPKSSAVLLDQLSGENKAWRTGNKNALELNSGPLWGYSSICGMRPEMEDVISVQPQLFQVPSQMLMNDHVNENEKQTLAHFFAVYDGHGGLQVANYCQERLHSVLIEEIEAAQSSLAETNGRDDWQDHWKKAFINCFQRVDDEVGGTGASNNGNNSGGSESSIEPVAAETAGSTAVVAILSQTLIIVANCGDSRTVLYRGKEAMPLSSDHKPNREDERARIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWIIPEPEVNIVRREKNDECLILASDGLWDVMTNEEACEVARKRILLWHKKFGENGAAEHSEGADPAAQSAAEYLTKLAIHRGSQDNISVIVIDLKAQRRIKRKP 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01459 561 PANTHER PROTEIN PHOSPHATASE 201 551 IPR015655 GO:0004722|GO:0006470
Vimu7g01459 561 Gene3D - 226 561 IPR036457 -
Vimu7g01459 561 MobiDBLite consensus disorder prediction 349 370 - -
Vimu7g01459 561 FunFam Protein phosphatase 2C 16 226 561 - -
Vimu7g01459 561 SMART PP2C_4 228 549 IPR001932 -
Vimu7g01459 561 CDD PP2Cc 240 551 IPR001932 -
Vimu7g01459 561 SUPERFAMILY PP2C-like 236 552 IPR036457 -
Vimu7g01459 561 ProSiteProfiles PPM-type phosphatase domain profile. 238 551 IPR001932 -
Vimu7g01459 561 ProSitePatterns PPM-type phosphatase domain signature. 285 293 IPR000222 GO:0043169
Vimu7g01459 561 Pfam Protein phosphatase 2C 257 544 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01459 Vimu-Chr7 13866119 13868696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01459 171 561 PP2C-type Phosphatase Gene Family AT4G26080 54.156 9.93e-137 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01459 K14497 - gmx:100802159 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01459 7 13866119 13868696 Vimu7g01459 7 13866119 13868696 ECH
Vimu7g01459 7 13866119 13868696 Vimu10g00430 10 3225923 3227299 PCT