Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01453 ATGCCATTAAATTTCAGTTTTTCTTCTTCCAGGAAGCTAAAAGGACCTGGAATACCAACTACCAGCCTAAGATGTGCTCCAGACAGTTGTGATGTGTATGTTGTAGCTAGAGACAGAATTGTTTCGAAGTTGGCCGATCTGTCACATTCACATTCTCGTGAGGCTAGCCCAAGCTACTTCATGTCTACTAAAGTAAATAAAGTAGACAATGACGCCGGCCTTGATAGAGAAATGTCGGGAATCAGTTCATCAACAACAGAGTCTAAATTCCTAAAGAATTTCAGATTTTTACCAATATCCGAGCATAGCTACATTGGCCTGCAAACATTTAGTCGCAGGGATTCTTTTGAAAATTCTACCAAAAGTCATAATCCAGAAAACTGTGGAGATGATATTGAAATGATTAGCCTCCACTCTTTTGATTCCATTGCTTCTGCACAACGTGAACAGTTAGCCATGCAAGAAGAAGTAGAACGGCTGCAACTGGAGTTGCAAAATACTATCGCCATGTACAAACAGGTTTGTGAAGAGCTGGTTCAAGCTCAACACCAGGCCCTTATACTTTCTTCTGAATCTCTTGAAGAAACTAAAAGAGTGAATGCTTCCCTAAAAAGAGAGGAGGTTTTGAGAAAGATTGCTTCTGAAGAGAAAACTAAGTATTTAAAAGTCATGAAGGAACTTGAGGAGGCAAAAAATAAGTTTTCCAAAGAGTCATATGAAAGACAGATGGCTGAACTTGATGTCCTTAAAGAATCAATAGAGAAACAGAGAATTGTTGATACATTACTCTCAAATGACACGAGATACAGAAAGTACACCATGGACGACATCAAGATAGCCACAAAATTCTTTTCTGAGGACTTGATGATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACACACCAGTAGCTGTAAAGATTCTACATAAGGATGCAATCAACAAGAAAGAGGAGTTTCTAAAAGAGGTTGAGATTCTCAGTCAACTGCATCATCCTAACATGGTTTTGTTACTTGGAGCCTGTCCTGAGAATGGTTGCCTAGTTTATGAATACCTGGAAAATGGAAGTCTAGAAGACTATCTTCTCAATAAAAATAGAAAACCATCACTTCCATGGTTTTTTCGATTTCGCATAGTTTTTGAAATGGCTTGTGGGCTTTCATTCTTGCATAATTCGAAGCCAGAACCGATTGTCCACCGAGATATAAAACCTGGCAACATTTTGTTAGACAAAAATTATGTGAGCAAAATTGCTGATGTTGGGCTGGCTAAACTCCTTGCAGAAGTTTCTCCTGACAATATTACAGAGTACCGAGAATCAGTCCTTGCCGGTACTCTGCATTACATGGACCCAGAATATCAGAGAACTGGCACTGTCCGACCAAAATCAGATGTATATGCATTTGGAGTTATAACTCTCCAATTAATAACTGGTCGCCAAGCACGTGGACTCATTATGATTGTTGAAGATGCAATTAGAAATGGCTCCTTCCGTGACTTTTTAGATGCATCAGCTGGAGATTGGCCATTGGATGAGACAATGGAATTGGCTCAAGTTGCCCTTAAATGCACAGCACTTAGATGCAGAGATAGACCAGAACTTGATACTGAAATTCTTCCACTGCTCGAAAGATTTTCTAATGCGGCAAATGCCAGTGCAAGGATAGGAAGAAATAGTGTAAGTGCACCGAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACAGAGCAATCAAGGCATGGCTCAGCAGACACAATGTGTCACCCATGACAAAGCTTAAACTTCAGCATTCTGTGTTGACTCCGAACCATACTCTACGGTCTGCCATTCAGGAGTGGAAGTCAGGAGTCACCTTTTGA 1917 0.4022 MPLNFSFSSSRKLKGPGIPTTSLRCAPDSCDVYVVARDRIVSKLADLSHSHSREASPSYFMSTKVNKVDNDAGLDREMSGISSSTTESKFLKNFRFLPISEHSYIGLQTFSRRDSFENSTKSHNPENCGDDIEMISLHSFDSIASAQREQLAMQEEVERLQLELQNTIAMYKQVCEELVQAQHQALILSSESLEETKRVNASLKREEVLRKIASEEKTKYLKVMKELEEAKNKFSKESYERQMAELDVLKESIEKQRIVDTLLSNDTRYRKYTMDDIKIATKFFSEDLMIGEGGYGKVYKCNLDHTPVAVKILHKDAINKKEEFLKEVEILSQLHHPNMVLLLGACPENGCLVYEYLENGSLEDYLLNKNRKPSLPWFFRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDKNYVSKIADVGLAKLLAEVSPDNITEYRESVLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRQARGLIMIVEDAIRNGSFRDFLDASAGDWPLDETMELAQVALKCTALRCRDRPELDTEILPLLERFSNAANASARIGRNSVSAPSQYYCPILQEIMDDPYIAADGFTYEYRAIKAWLSRHNVSPMTKLKLQHSVLTPNHTLRSAIQEWKSGVTF 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01453 638 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 567 636 IPR013083 -
Vimu7g01453 638 ProSitePatterns Protein kinases ATP-binding region signature. 290 311 IPR017441 GO:0005524
Vimu7g01453 638 Coils Coil 210 256 - -
Vimu7g01453 638 SUPERFAMILY Protein kinase-like (PK-like) 267 539 IPR011009 -
Vimu7g01453 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 402 414 IPR008271 GO:0004672|GO:0006468
Vimu7g01453 638 PANTHER OS02G0152300 PROTEIN 12 631 - -
Vimu7g01453 638 SMART Ubox_2 570 632 IPR003613 GO:0004842|GO:0016567
Vimu7g01453 638 CDD RING-Ubox_WDSUB1-like 568 622 - -
Vimu7g01453 638 Pfam U-box domain 568 633 IPR003613 GO:0004842|GO:0016567
Vimu7g01453 638 Pfam Protein tyrosine and serine/threonine kinase 289 540 IPR001245 GO:0004672|GO:0006468
Vimu7g01453 638 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 256 356 - -
Vimu7g01453 638 ProSiteProfiles Protein kinase domain profile. 284 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01453 638 Gene3D Transferase(Phosphotransferase) domain 1 357 566 - -
Vimu7g01453 638 SMART serkin_6 284 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01453 638 Gene3D Phosphorylase Kinase; domain 1 263 356 - -
Vimu7g01453 638 Coils Coil 143 177 - -
Vimu7g01453 638 ProSiteProfiles U-box domain profile. 566 638 IPR003613 GO:0004842|GO:0016567
Vimu7g01453 638 SUPERFAMILY RING/U-box 561 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01453 Vimu-Chr7 13822296 13828651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01453 14 634 Plant U-box Gene Family AT5G57035 53.822 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu7g01453 PK_Tyr_Ser-Thr 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01453 - - vun:114178082 1198.34