Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01448 ATGGAACCTCGTGTTGGGAATAAGTTTCGCCTGGGTCGGAAGATCGGAAGCGGCTCCTTTGGGGAGATCTATTTAGGTACTAATATTCAAACAAACGAAGAGGTCGCAATTAAGCTTGAAAATGTCAAGACAAAGCATCCTCAGTTGCTGTATGAGTCCAAGCTGTACAGAATCCTTCAGGGAGGAACTGGAATCCCAAATGTCAGATGGTTTGGAGTCGAGGGAGATTACAATGTTTTAGTGATGGATCTGCTGGGACCTAGTCTTGAAGATCTATTTAACTTCTGTAGTAGAAAGCTATCACTGAAGACAGTTCTCATGCTTGCTGATCAAATGATCAACCGTGTTGAGTTCATTCATTCTAAATCATTTCTGCATCGAGATATCAAACCAGATAACTTTCTAATGGGATTAGGAAGGCGTGCAAACCAGGTTTATGCTATTGATTTTGGTTTGGCTAAGAAATATAGAGATAGTTCAACACATCAACATATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATATGCCAGCATGAATACTCACCTTGGCATTGAGCAAAGCAGAAGAGATGATCTCGAGTCTCTTGGTTATGTTTTGATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAGGGACTTAAAGCAGGAACAAAGAAACAGAAGTATGAAAAAATCAGTGAAAAGAAGGTTTCTACCTCGATTGAAGCCCTGTGTCGTGGCTATCCAACAGAATTTGCATCTTACTTTCATTACTGCCGATCATTAAGGTTTGATGATAAGCCAGATTATGCTTACCTCAAAAGGATATTTCGGGACCTTTTTATACGTGAAGGATTCCAGTTTGATTATGTCTTTGATTGGACCATTTTGAAGTATCAGCAATCACAGTTAGCCACTCCTCCAACACGAGCCATTGGTCCCAGTGCTGGAACCAGTTCTGGAATGCCCCCAGCTGTTACTAATGCTGATAGGCATACAGGAGGGGAAGAAGGGCGACCTCCTGCTGTGGTTTCAGTGGATTCCTCAAGGCGCAGAATGTCAGGGCCCATTTTAAATACTTTATCAAGTGCCAATGTCTTGGGTCAGTCGAGTGGATCATCGAGGCGGGTTGCTGTATCTGGTAGTCGTGATGCATTTGTTGGTACTGAGTCGGATATTCGAACTCGCACTGCTGAAGCCAGCCCTGGAGTAGCACACAGAGGTTTGAGTGGGCAAAGAAGTTCACCAATTGGATCTTCTGATCCAAAGAGAGTTGTATCATCCGGGAGAAACGCTTCTCATGTGAAAAATTATGACTCTGTACTCAGGGGCATGGAAGGCACTGCCAAAGTTGCTTATGTTGCTAAGTTGAGCTGTGAGGAAATTTGGATCTGA 1383 0.4309 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYRILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFIHSKSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDKPDYAYLKRIFRDLFIREGFQFDYVFDWTILKYQQSQLATPPTRAIGPSAGTSSGMPPAVTNADRHTGGEEGRPPAVVSVDSSRRRMSGPILNTLSSANVLGQSSGSSRRVAVSGSRDAFVGTESDIRTRTAEASPGVAHRGLSGQRSSPIGSSDPKRVVSSGRNASHVKNYDSVLRGMEGTAKVAYVAKLSCEEIWI 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01448 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vimu7g01448 460 PANTHER CASEIN KINASE-RELATED 9 364 - -
Vimu7g01448 460 Gene3D Transferase(Phosphotransferase) domain 1 1 311 - -
Vimu7g01448 460 FunFam Putative Casein kinase I 1 85 - -
Vimu7g01448 460 CDD STKc_CK1_delta_epsilon 8 282 - -
Vimu7g01448 460 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01448 460 MobiDBLite consensus disorder prediction 303 322 - -
Vimu7g01448 460 FunFam Casein kinase I isoform delta-like 1 308 - -
Vimu7g01448 460 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01448 460 MobiDBLite consensus disorder prediction 386 428 - -
Vimu7g01448 460 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vimu7g01448 460 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01448 460 MobiDBLite consensus disorder prediction 408 428 - -
Vimu7g01448 460 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vimu7g01448 460 MobiDBLite consensus disorder prediction 303 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01448 Vimu-Chr7 13770571 13775291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01448 7 223 EF-hand Containing Proteins AT2G17890 26.667 1.67e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vimu7g01448 Pkinase 1e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01448 K02218 - gmx:100811567 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01448 7 13770571 13775291 Vimu7g01448 7 13770571 13775291 ECH
Vimu7g01448 7 13770571 13775291 Vimu10g00415 10 3129366 3138389 PCT