Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01446 ATGGGAGAACAACTGCCACCACTCAAAGCAGAGATCTTTGACCACAGCGAAAATCATCGCCACGACGACGTTTTCAGTGACAGCAAGGACTCCGTTCTGACTGAAGAGCCAACGGCGGTTCACATCAAAGAAGAACTGGATGACGGCGCCGTTAACGGTTTCATGGATAAGATGCCGAAACCGATGGAAGGCTTGCACGAGATGGGCCCCCCACCGTTCCTGAAGAAGACCTTCGATATGGTGGAGGACCCTAAGACTGACCCCGTTGTCTCATGGAGTCAAACTCGCGATAGCTTCGTCGTTTGGGACTCCCATGAATTCTCCAAAACCCTTCTTCCCAAATACTTCAAGCACAGCAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGCTTCAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCGAATGAAGGATTCCAAGGAGGGAAGAGGCATTTGCTGAAGAACATAAGGAGGAGAGGTAAGTACAACAGACTGCATCAGGGAGCTTTCAATATGATGAAGCCAGGCGTGGAGGCTGAATTGGAGAAACTGAAGAAGGACCAGAACATTTTGAAGGTGGAAATTCTGAAACTGAGGCAGCAGCAGGAGAATTCGCATGTTCAGCTCACTAATGCTCAGGAGAGAGTTCGGTGTGCAGAGATGAAGCAGTATCAGATGATGTTTTTCCTCACTAGAATGGCTAGAAGGCCCGCGTTTGTTGAGCAGTTAATCCAAAAGATTAGAAGGAAAAGAGAGCTTGATGGTAACGACATGGTTAAGAGGCCTAGATTGATGGGAAACCCCTGCTGTGTACCCTTCCCAAAGACCATGGAGACAACCCCTGATGTTGATTACAGACCCCAAAATCATAAACAATTCCCTTCAATGCAATCCGAGGTCGGTGGATTTCTGTCTGAAAGTGTGAACATCAGCAAGATGGAGCACCCAACTCCCTCCCCCTTGGAAGATGAATTGTGTAACCCTGTGCAAGGGTCAAGGGCCCATGGTTGTTCCAGCGCAAATGCGCCAGATGCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGCGGGAAAATTCTGTAGTTGATGAAGAATTAGATGTGAACGACTCTAATATCTATCTTGAATTGGAGGATTTGATCACTAAGCCATCGGATTGGTCTCTTGGATCTGCAAATGGATTGTGGTCAATCTTCCTCTCCAACTCTAAATGTTTAGTTATGAACAATCTGGTCCTTAATGTTGCATTTGGCAATTTATGCAGGGTGCAATTTCAGGACCCAGTTGCTCGCCCCAGCTTTTTATATGATGAAGCGAGAGTTTTCATGTTTCAGTTTCCTTTGTCTAATGTAGCCTGTCCTTTCCTTTGTCTCCTAGAATTTGTAGTCATCGGCTTCGTGACTCACTTTCAGGTTTAG 1431 0.4633 MGEQLPPLKAEIFDHSENHRHDDVFSDSKDSVLTEEPTAVHIKEELDDGAVNGFMDKMPKPMEGLHEMGPPPFLKKTFDMVEDPKTDPVVSWSQTRDSFVVWDSHEFSKTLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKRHLLKNIRRRGKYNRLHQGAFNMMKPGVEAELEKLKKDQNILKVEILKLRQQQENSHVQLTNAQERVRCAEMKQYQMMFFLTRMARRPAFVEQLIQKIRRKRELDGNDMVKRPRLMGNPCCVPFPKTMETTPDVDYRPQNHKQFPSMQSEVGGFLSESVNISKMEHPTPSPLEDELCNPVQGSRAHGCSSANAPDASSAYHVMSEKLMRENSVVDEELDVNDSNIYLELEDLITKPSDWSLGSANGLWSIFLSNSKCLVMNNLVLNVAFGNLCRVQFQDPVARPSFLYDEARVFMFQFPLSNVACPFLCLLEFVVIGFVTHFQV 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01446 476 Pfam HSF-type DNA-binding 73 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g01446 476 Coils Coil 184 204 - -
Vimu7g01446 476 PRINTS Heat shock factor (HSF) domain signature 111 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g01446 476 PRINTS Heat shock factor (HSF) domain signature 73 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g01446 476 PRINTS Heat shock factor (HSF) domain signature 124 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g01446 476 FunFam Heat shock transcription factor 1 66 163 - -
Vimu7g01446 476 SUPERFAMILY "Winged helix" DNA-binding domain 69 162 IPR036390 -
Vimu7g01446 476 ProSitePatterns HSF-type DNA-binding domain signature. 112 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g01446 476 Gene3D - 66 163 IPR036388 -
Vimu7g01446 476 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 59 302 IPR027725 -
Vimu7g01446 476 SMART hsfneu3 69 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01446 Vimu-Chr7 13754053 13756261 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01446 59 273 HSF AT2G26150 54.054 1.68e-79 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu7g01446 HSF_DNA-bind 5.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01446 K09419 - gmx:100818430 652.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01446 7 13754053 13756261 Vimu7g01446 7 13754053 13756261 ECH