Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01445 ATGGATAAGACCCCGAAACCGATGGAAGGCTTGCATGAGATGGGTCCCCCTCCGTTCCTGAAGAAGACCTTCGATATGGTTGAGGACCCTAAAACTGACCCCGTTGTCTCATGGAGTCAAACTCGCGATAGTTTCGTCGTTTGGGACTCCCATGAATTCTCCAAAACCCTTCTTCCCAAATACTTCAAGCACAGCAACTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGCTTCAGGAAGGTTGATTCAGACCGTTGGGAGTTTGCGAATGAAGGATTCCAAGGAGGGAAGAGGCATTTGCTGAAGAACATAAGGAGGAGAGGTAAGTACAACAGACTGCATCAGGGAGCTTTCAATATGATGAAGCCAGGCGTGGAGGCTGAATTGGAGAAACTGAAGAAGGACCAGAACATTTTGAAGGTGGAAATTCTGAAACTGAGGCAGCAGCAGGAGAATTCGCATGTTCAGCTCACTAATGCTCAGGAGAGAGTTCGGTGTGCAGAGATGAAGCAGTATCAGATGATGTTTTTCCTCACTAGAATGGCTAGAAGGCCCGCGTTTGTTGAGCAGTTAATCCAAAAGATTAGGAGGAAAAGAGAGCTTGATGGTAACGACATGGTTAAGAGGCCTAGATTGATGGTGAACCCCTGCTATGTACCCTTCCCAAAGACCACGGAAACAACCCCTGATGTTGATTACAGACATCAAAGTCATAAACAATTCCCTTCAATGCAATTCGAGCTCGACGGATTTCTGTCTGAAACTGTGAACATCAGCAAGATGGAGCACCCAACTCCCTCTCCCATGGAAGAAGAATTCTGTAACCCTGTGCAAGGGTCAAGGGCCCATGGTTGTTCTAGCGCAAATGCGCCAGATGCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGCGGGAAAATTCTGTAGTTGACGAAGAACTAGATGTGAATGACTCTAATATCTATCTTGAATTGGAGGATTTGATCACTAAGCCATCGGATTGGTCTCTTGGATCTGCAAATGGATTGGTGGAACAAACTAGTTGA 1053 0.4596 MDKTPKPMEGLHEMGPPPFLKKTFDMVEDPKTDPVVSWSQTRDSFVVWDSHEFSKTLLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKRHLLKNIRRRGKYNRLHQGAFNMMKPGVEAELEKLKKDQNILKVEILKLRQQQENSHVQLTNAQERVRCAEMKQYQMMFFLTRMARRPAFVEQLIQKIRRKRELDGNDMVKRPRLMVNPCYVPFPKTTETTPDVDYRHQSHKQFPSMQFELDGFLSETVNISKMEHPTPSPMEEEFCNPVQGSRAHGCSSANAPDASSAYHVMSEKLMRENSVVDEELDVNDSNIYLELEDLITKPSDWSLGSANGLVEQTS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01445 350 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 236 IPR027725 -
Vimu7g01445 350 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g01445 350 Gene3D - 12 109 IPR036388 -
Vimu7g01445 350 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g01445 350 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g01445 350 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g01445 350 SUPERFAMILY "Winged helix" DNA-binding domain 15 108 IPR036390 -
Vimu7g01445 350 FunFam Heat shock transcription factor 1 12 109 - -
Vimu7g01445 350 Coils Coil 130 150 - -
Vimu7g01445 350 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vimu7g01445 350 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01445 Vimu-Chr7 13745205 13746666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01445 5 348 HSF AT2G26150 41.595 7.65e-82 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vimu7g01445 HSF_DNA-bind 6.4e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01445 K09419 - gmx:100818430 612.453