Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01440 ATGGCTGTCTTCATGGGATGCAAAGCGGGAGAAATCGAACTTGGCTTCTCCAACATTCCTCAAGTAAGCAAACTATACACTCTCATGATATCGATGCGTCGATGGTTTTGGCATCTCATAAACTATAACCAGTGTACTATTCAGGATGACATTGAGACAGCACTTCAGAATTTATTCCCAGAAGATTTCTATATGCGTTTCCAATCAATTGATCAGAATCCATACTCATCCTCATCATCTTCTTTCATAATATCATCTACAAATACCTTTAATCAATCACTCGATGTTCCGGGAACTTCCCACTCCAACTTCCCTGATGCCCTCGGTGTGGCTCCCTCACAACCGACTTCTCACCAACACAATATCCAACCATTGTCTCAAGTCATTCCATTTCCAAGCCATTTACCAACACCAGAGGGTGAATATCAAGAAATGGTAAGAGCATTAATCCGAGTCCTGTCTTCAACTTCTCAGCAGCAGCAACCCTATCAAGTTTTGCCTCATACTTCTGTAACACACCCTGGCGCTCCCGATTTCGTGAGATATGGATCAGATTCAAATATAAACCCACACACGGAGTCCAATTTTAGCAGGCGAAACCTGCAGAATACATCATTTCCATTGCTTAAAAACTTAAATTCAAAGAGAATGAGAGAACGCGATACTATTAAACCAACCCACCCCATTAGTTCCCAGAAGTACTATCACACGATATCGGAAAGAAAACGTCGTGAAAAACTCAGTGAGTGTTTTCAGGAACTCAGCGCATTTCTTCCTCCGGGAACAAAGAAAAACAAAAGGTGGATTCTTACAGCAGCAAAGGAGACAATGAGATCTTTGATGGTTGAAATTGAAGAGCTTAAGATGAGAAATGAGAAGCTGATGAGAGTTTTGTCAGGCAAAGAAGTTGGTAGTAGTAGGGAGGAAAACAGAGGCGGGTCCTCTAATGAAAGATTGAATGTTCGGGTTTTGCATGCATCAGAACCAAGTTCATCAGAAGAGCAAATGGTGAACTTGGAAGTGACGGTGAGAGAACAAAGCAGTGAAGTTAATGTATTGGTTCGCATATTGGAATTCTTAGAAAGGGTTCAGAACGTAACCTTGATTTCCACGAACACAGACCTCCATATTACAGAAGGAGGGACAACCATTAATGTATTAACCTTCAGGCTGAGGATTATTAAGGGTAGTGAATGGGACGAGGTTGGGTTCGAGGAAGCAGTAAGAAGAGTGGTTGCTGACGTAACACATCGTGAATTCCACCCATAA 1269 0.4192 MAVFMGCKAGEIELGFSNIPQVSKLYTLMISMRRWFWHLINYNQCTIQDDIETALQNLFPEDFYMRFQSIDQNPYSSSSSSFIISSTNTFNQSLDVPGTSHSNFPDALGVAPSQPTSHQHNIQPLSQVIPFPSHLPTPEGEYQEMVRALIRVLSSTSQQQQPYQVLPHTSVTHPGAPDFVRYGSDSNINPHTESNFSRRNLQNTSFPLLKNLNSKRMRERDTIKPTHPISSQKYYHTISERKRREKLSECFQELSAFLPPGTKKNKRWILTAAKETMRSLMVEIEELKMRNEKLMRVLSGKEVGSSREENRGGSSNERLNVRVLHASEPSSSEEQMVNLEVTVREQSSEVNVLVRILEFLERVQNVTLISTNTDLHITEGGTTINVLTFRLRIIKGSEWDEVGFEEAVRRVVADVTHREFHP 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01440 422 MobiDBLite consensus disorder prediction 299 318 - -
Vimu7g01440 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 231 297 IPR036638 GO:0046983
Vimu7g01440 422 MobiDBLite consensus disorder prediction 299 315 - -
Vimu7g01440 422 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 55 414 IPR044658 -
Vimu7g01440 422 Gene3D - 230 303 IPR036638 GO:0046983
Vimu7g01440 422 SMART finulus 237 286 IPR011598 GO:0046983
Vimu7g01440 422 Coils Coil 270 297 - -
Vimu7g01440 422 Pfam Helix-loop-helix DNA-binding domain 235 280 IPR011598 GO:0046983
Vimu7g01440 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 231 280 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01440 Vimu-Chr7 13692787 13694875 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01440 230 417 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 44.737 1.47e-36 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu7g01440 HLH 2.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01440 - - vra:106766500 728.013