Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01424 ATGATTCCAGCCTATCGCCACTCTTCTGTGATTCATTTGGATCTTAATGAAGATCAAAACCATGAGCTCTTCACTCCCACTCATCATGCTTACCCTTCTTTTTCTTATCTATCTTCACCATATCCCGTCCTCTTCAACCCTCCACATGAAGAAGATGGATCACACACCTGGGAACCAACAAAGCACGTATCAGGTCATGAAGAGGCTGAGAAGATTAACCCTACCATGGGATCACGGGATCACTCGGTGGCACAAAGTGAGCTCAAGGTGACAGTTTACAAGCAGAAAGAGAGGAGTGAAGATCACGAAGCAGCTGCTGAGGATGGTTCGGTGAAGTTGATGTCTTCAAAGATGAGAATGATGCAGAAGATGATGGGGCCCGATCAAACTGGTGCATATATAGAAGACAGCACTGTGCATAAGTTTGAAGATGAGAAGCAACCATTATCACCGCTTGGAACTGATAACAGCAGCAGCAACAACTGTTCAAACCACAGTAACAACACTGTTAGGGTTTGTGCTGATTGCCACACCACTAAGACCCCTCTTTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAACGCCTGTGGAATTCGACAGAGGAAGGCGAGACGAGCCATGGCAGCTGCAGCATCGGGAAATGGAACAATGTTTTTGGAAACTGAGAAGCCTGTGAAGGGAAACAAGTTGCAGAAGAAAGAGAAGAAGGCAAGAACTCAGGTTGCACCACAGATGAAAAAGAAGCGCAAGCATGGAGTTGGAGCAAAGCCATCTCAAAGCAGAAACAAGTTTGGTTTTGAGGATTTGACATTACGCCTAAGAAAGAGCTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCCTTCTCATGGCTTTATCTTATGGCCTTGTTCACGGATGA 921 0.4647 MIPAYRHSSVIHLDLNEDQNHELFTPTHHAYPSFSYLSSPYPVLFNPPHEEDGSHTWEPTKHVSGHEEAEKINPTMGSRDHSVAQSELKVTVYKQKERSEDHEAAAEDGSVKLMSSKMRMMQKMMGPDQTGAYIEDSTVHKFEDEKQPLSPLGTDNSSSNNCSNHSNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAASGNGTMFLETEKPVKGNKLQKKEKKARTQVAPQMKKKRKHGVGAKPSQSRNKFGFEDLTLRLRKSLAMHQVFPQDEKEAAILLMALSYGLVHG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01424 306 MobiDBLite consensus disorder prediction 51 85 - -
Vimu7g01424 306 MobiDBLite consensus disorder prediction 51 75 - -
Vimu7g01424 306 Pfam GATA zinc finger 173 206 IPR000679 GO:0006355|GO:0043565
Vimu7g01424 306 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 208 - -
Vimu7g01424 306 ProSitePatterns GATA-type zinc finger domain. 173 198 IPR000679 GO:0006355|GO:0043565
Vimu7g01424 306 Gene3D - 171 209 IPR013088 GO:0006355|GO:0008270
Vimu7g01424 306 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 15 306 - -
Vimu7g01424 306 FunFam GATA transcription factor 21 167 255 - -
Vimu7g01424 306 MobiDBLite consensus disorder prediction 244 258 - -
Vimu7g01424 306 MobiDBLite consensus disorder prediction 227 243 - -
Vimu7g01424 306 SMART GATA_3 167 218 IPR000679 GO:0006355|GO:0043565
Vimu7g01424 306 ProSiteProfiles GATA-type zinc finger domain profile. 167 203 IPR000679 GO:0006355|GO:0043565
Vimu7g01424 306 CDD ZnF_GATA 172 200 IPR000679 GO:0006355|GO:0043565
Vimu7g01424 306 MobiDBLite consensus disorder prediction 227 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01424 Vimu-Chr7 13553404 13554649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01424 85 306 C2C2-Gata Transcription Factor Family AT4G26150 39.683 2.33e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu7g01424 GATA 3.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01424 - - gmx:100810698 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g01424 7 13553404 13554649 Vimu7g01424 7 13553404 13554649 ECH
Vimu7g01424 7 13553404 13554649 Vimu10g00393 10 2909396 2910774 PCT