Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu7g01417 ATGACATTATTGACCAAAACTGTTGAATCAGAATGCTTTCTTCTGCCCCAAAGAATGCCTCGGAGAGTACTTCAAGTGACTGCACAGGAACCTCCTTCATCCTCTTTGGCTTTGAAAGCCTCCACTTCACGCTACGACCCTGGAATGTTCTTCTTCCTTGGGGGGACTGTGTTGCTCATCATATTGCTCATTCTTCTGTTTATATTTTGGAGGCGTACTAAAGGGCCAGCGAAGGTGAACTCAACTCTAACATGTCAGCAACATGGGAAATATATTAAACCGTATGAGGCGATGAAGATGATGGTCCCAAATATTCAACCAGGACAGATGGAGTTCATTAGTGGAAACCTTCGGACAATTAGCTACTTTGACTTCCGGACATTGAGGAGAGCCACTAAGAATTTCCACCCTCGAAATCTGCTTGGAAGTGGTGGATTTGGGCCTGTCTATCAGGGCAAGTTGGCAGATGGAAGGCTTGTTGCAGTAAAGACATTGTCTCTTGACAAGTCTCAACAAGGAGAAAAAGAATTTCTGGCAGAAGTGAGAATGATCACAAGCATCCAACACAAAAATCTGGTTCGCCTTCTCGGATGCTGCACAGATGGACCTCAAAAGATACTCGTAGGTTATACAGCTCCTGAGTATGCCATTAGAGGAGAGTTGTCCGAAAAGGCAGACATCTATAGTTTCGGAGTTCTTGTGCTTGAAATAATCTGTTGCAGGAAAAACACAGACCTTACTTTACCATCAGAAATGCAGTACCTACCTGAATATGCATGGAAACTTTACGAGAAGTCAATGTTGATGGAAATAGTGGATCCAAGACTGCGAGAAGAAGGGATGGAGGAAAAGGATGTTATGCAAGCATTTCACGTGGCCTTATCGTGCCTTCAGCCACATGCGGATTTGAGACCTGCGATGTCAGAAATCGTAGCATTGCTGACATTCAAAGTTGAAATGGTTGCCAAGCCGGTGAGGCCAACCTTCGTTCACAGGAGGCGCGTAATGGATGATGAGAACCATTCTTGGGGAGCCATATCCTCCTCCTCCGAACCTTCCACAACTGCAGTGGCATCATTGTAA 1083 0.4506 MTLLTKTVESECFLLPQRMPRRVLQVTAQEPPSSSLALKASTSRYDPGMFFFLGGTVLLIILLILLFIFWRRTKGPAKVNSTLTCQQHGKYIKPYEAMKMMVPNIQPGQMEFISGNLRTISYFDFRTLRRATKNFHPRNLLGSGGFGPVYQGKLADGRLVAVKTLSLDKSQQGEKEFLAEVRMITSIQHKNLVRLLGCCTDGPQKILVGYTAPEYAIRGELSEKADIYSFGVLVLEIICCRKNTDLTLPSEMQYLPEYAWKLYEKSMLMEIVDPRLREEGMEEKDVMQAFHVALSCLQPHADLRPAMSEIVALLTFKVEMVAKPVRPTFVHRRRVMDDENHSWGAISSSSEPSTTAVASL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu7g01417 360 Pfam Protein tyrosine and serine/threonine kinase 139 208 IPR001245 GO:0004672|GO:0006468
Vimu7g01417 360 FunFam Cysteine-rich receptor-like protein kinase 10 100 211 - -
Vimu7g01417 360 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 208 350 - -
Vimu7g01417 360 Gene3D Phosphorylase Kinase; domain 1 108 207 - -
Vimu7g01417 360 ProSiteProfiles Protein kinase domain profile. 135 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu7g01417 360 SUPERFAMILY Protein kinase-like (PK-like) 121 340 IPR011009 -
Vimu7g01417 360 Gene3D Transferase(Phosphotransferase) domain 1 208 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu7g01417 Vimu-Chr7 13506283 13509460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu7g01417 123 334 Receptor kinase-like Gene Family AT4G23280 33.594 4.74e-32 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu7g01417 PK_Tyr_Ser-Thr 1.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu7g01417 - - vum:124823710 297.36